Neisseria brasiliensis: GJV52_06615
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Entry
GJV52_06615 CDS
T06557
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
nbl
Neisseria brasiliensis
Brite
KEGG Orthology (KO) [BR:
nbl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nbl03019
]
GJV52_06615 (hrpA)
Enzymes [BR:
nbl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GJV52_06615 (hrpA)
Messenger RNA biogenesis [BR:
nbl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GJV52_06615 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
AAA_22
DEAD
HA2_N
AAA_19
AAA_23
nSTAND3
ABC_tran
T2SSE
NACHT
TraI_middle
RsgA_GTPase
ResIII
AAA_29
zf_C2H2_ZNF598
Motif
Other DBs
NCBI-ProteinID:
QGL25232
LinkDB
All DBs
Position
1281859..1286100
Genome browser
AA seq
1413 aa
AA seq
DB search
MSQATFQPDLSQTLSKDRHFLRQALNNPKRFGGKEVVQQKYQQSHQRFLKRQAKLPKPEY
AGNLPVHERLDDIKTAIQNHQVTIICGETGSGKTTQLPKICLELGRGTAGLIGHTQPRRL
AARSVAERIAEELGSPIGETVGYKVRFNDNTSRDAYVKLMTDGILLAETQTDRFLTAYDT
IIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDAERFSKHFNGAPVLEVSGRT
FPVEILYRPLHQADEDEAEIELTEAIVDAADELARYGEGDILVFLPGEREIREAAEALRK
SPLRRNDEILPLFARLSNAEQHKIFHPSGSKRRIVLATNVAETSLTVPGIKYVIDTGLAR
VKRYSARAKVEQLHVEKISQAAARQRSGRCGRVSAGVAVRLYSEEDFNQRTAFTDPEIIR
SNLAAVILRMAALKLGDVAAFPFLEAPDQRYINDGFQVLLELGAVNEQNELTKLGEQMAR
LPIDPKISRMLLAAKKHDCVQEMLVIVSALSIQDPRERPLEARDAAAKAHERFTDKQSDF
LAYLNIWDSFQRERDKGLSNKQLVQWCRQYFLSHLRMREWRELHKQLAEIAIEMGLTDKE
RAFRRPPVQTHLRPYATEGSPRGKNKADQDLSAQFKQKQLDKKDHRAKIRAAKEAGYEQI
HRALLTGLIANVGMKSPDGHDYTGARGSHFHLFPASALFKSKPKWVMAAELTETTRLYAR
DVAEIKPEWIEQEAPHLVRYHYFEPHWEQKRGEVVASERVTLYGLTVLPRRPIAYGKVAP
EEAREIFIRGALVAQETDLKADFFIHNKKLIREVTELEHKSRKQDVLVDDEVLFEFYNQR
LPEMYVPSEKSSLPNAATVGSHPPYPRPSEKEVGRILVSDKKTGEPNKSEVGRILVSDKN
SDKPNKSDTSIRPTRPEKPKPLADIRTFQAWLKTAEATEPKLLFLSRDDLMQHAAAHITE
EQFPKFWKTADGKFKLAYRFEPNHPLDGVTMTVPLTVLNRLNAAELEWLVPGMLREKLQL
LIKALPKQIRRVCVPVPEFVTKFLENEPNRSEPIIPQLAHFIAKTAGDMRILEQINLDEW
ALHALPDFNYFNLRVVDDGGQELANGRKLHELQQQLGQAAAVTFRDNTQEFERDDVKTWD
IGKLPESIKFARGKQQLTGYLGLQKEKNGNIALRLFDTAEAAEQAHRQGVIELMKLQLKE
HVKDLNKGLPSFTQAAMLLRHINADTLREDLTQAVCDRAFIGDDDLPRDEKAFKEQIKRA
RSRLPAVKEAVSRYLQEVAAAYAELNSKLGKHPLSHLLRQRTNALLAEGFASRTPWQQWP
RLPIYLKAMTLRMDKYGSNPARDQAREAEIQDLEQMWQDKVDTLIKQGLPVSSEIDAFKW
MIEELRVSLFAQELKTPHPVSVKRLLKEWAQWA
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaagccacgtttcaacctgatttgtctcaaaccctttctaaagaccgccatttc
ctgcgccaagccttgaataacccgaagcgttttggcggtaaagaggtggtgcagcaaaaa
taccaacaatcgcaccagcgttttctcaagcgacaagccaagctgccgaagcctgaatat
gcgggcaatctgccggtgcatgagcgtttggacgacatcaaaaccgcgattcaaaaccat
caggtcaccatcatttgtggcgaaaccggttcgggtaaaaccacgcagttgcctaaaatt
tgtttggagctcggccgcggcacggcaggcttaatcggccatacccagccgcgccgtttg
gctgcgcgttcggtggcggagcgcattgctgaagaattgggcagcccgattggcgaaacc
gtcggctacaaagtgcgtttcaacgacaacacttcgcgtgatgcctatgtgaagctgatg
accgacggtattttgctggccgaaacgcaaaccgaccgctttctcaccgcctacgacacc
atcatcatcgacgaagcgcacgagcgcagtctgaacattgatttcctgctcggctatctc
aagcaactgttgccgcgccgccctgatttgaaagtcatcatcacttcggccacgattgat
gccgagcgtttttctaagcatttcaacggcgcgccggtgctggaagtaagcggccgcacg
tttcctgtggaaattctgtatcgcccgctgcatcaagctgatgaagacgaagctgaaatc
gagctgaccgaggccattgtcgatgccgccgatgaattggcgcgatacggcgaaggcgat
attttggtgtttttgccgggtgaacgcgaaatccgcgaggccgccgaagccttgcgcaaa
tcaccgttgcgccgcaatgacgaaatcctgccgttgtttgcgcgtttgtccaacgccgag
cagcacaaaatttttcacccgtcgggcagcaagcgccgcatcgtgttggcaaccaacgtg
gccgaaacttcgctcaccgtgccgggcattaaatatgtcatcgataccggtttggcgcgg
gtgaaacgctattctgcgcgcgccaaagtcgagcagctgcatgtggaaaaaatctcgcaa
gcggcggcacgccaacgttccggacgatgcggccgtgtatcggctggtgtggccgtgcgc
ctgtattcggaagaagacttcaaccaacgcaccgcgtttaccgaccccgaaatcatccgt
agcaatctggcggcggtgattttgcgcatggccgcgttgaagctgggcgatgtggccgcg
tttccgtttctcgaagcgccggatcagcgctatatcaacgatggttttcaggtgttgctg
gagctgggtgccgtcaatgagcaaaatgagctgaccaaacttggcgaacaaatggcgcgg
ctgcccatcgacccgaaaatcagccgcatgttgctggcggcaaaaaaacacgattgcgtg
caggaaatgctggtgattgtgtcggctttgtcgattcaagatccgcgcgaacgccctttg
gaagcgcgtgatgcggcggccaaggcgcacgagcgttttaccgacaagcaatccgatttt
ctggcgtatctgaatatttgggacagcttccagcgcgagcgcgacaaaggcttatccaac
aagcagttggtgcaatggtgtcgccaatattttctgtcgcacctgcgtatgcgcgagtgg
cgtgagttgcacaagcaactggccgaaatcgccattgaaatgggtctaaccgataaagaa
cgtgcgttcagacggcctcctgtacaaacgcatttaaggccgtatgcgaccgaaggaagt
ccccgtgggaaaaacaaagctgaccaagatttatcggcgcaattcaaacaaaaacaatta
gacaaaaaagaccatcgcgccaaaatccgcgcggccaaagaagccggctacgagcaaatc
caccgcgccttgctcaccggcctgattgccaatgtcggcatgaaatcgcccgacggccac
gattacaccggcgcacgcggcagccattttcatctgttccccgcttcggctttgttcaaa
agcaaaccgaaatgggtgatggctgccgagctaaccgaaaccacacgtctgtatgcgcgc
gatgtggccgaaatcaagccggaatggattgaacaggaagcgccgcatttggtgcgctac
cattatttcgagccgcattgggagcaaaagcgcggcgaagtggtggccagcgaacgcgtg
accttgtatggcctgaccgtcttgccacgccgcccgattgcctatggcaaagtcgccccc
gaagaagcgcgtgagatttttattcgcggcgcattggtagcgcaggagaccgatttaaag
gcggattttttcattcacaacaaaaaactgattcgcgaagtgaccgagttggaacacaaa
tcgcgcaagcaggatgtgttggtggatgatgaagtgttgtttgagttttacaaccagcgt
ttgcctgaaatgtatgtgccgtctgaaaaatcatcattgccaaacgcggcaacggtgggt
tcacacccaccctacccaaggccgtctgaaaaagaagtaggccggatacttgtatccgac
aaaaaaacaggcgaacccaataaatcagaagtaggtcggatactcgtatccgacaaaaat
tcagacaagcccaacaagtcggatacgagtatccgacctacacggccagaaaagcctaaa
ccgctggcagacatccgcaccttccaagcatggcttaaaaccgctgaagccactgaaccc
aagctactgtttctcagtcgcgacgacttgatgcagcacgccgcggcacatattaccgaa
gagcagttccccaaattctggaaaaccgccgacggcaaattcaagctggcataccgcttc
gagccgaaccatccgcttgacggcgtcaccatgaccgtgccactgaccgtgctcaaccgc
cttaacgcagccgaactggaatggctggtgccgggtatgttgcgcgaaaaattgcagctg
ctgattaaagccctgccgaaacaaatccgccgcgtgtgcgtgccggtgccggagtttgtc
accaagtttttagaaaacgaaccaaaccgcagcgagccgattattccgcagcttgcccac
tttatcgccaaaaccgccggcgatatgcgcattctcgagcaaatcaatctggacgaatgg
gcattacacgcgttgccggatttcaattatttcaacttgcgcgtggtggatgacggcggc
caagagttggccaacggccgcaagctgcacgaattgcaacagcaactcggccaagcggcg
gcggtaacgttccgcgacaatacccaagaattcgagcgcgacgatgtcaaaacgtgggac
atcggcaagctgcccgaatccatcaaattcgcccgcggcaagcagcagctcaccggctat
ctcggtttgcaaaaagagaaaaacggcaacatcgccctgcgcctgttcgacaccgccgaa
gccgccgaacaagcgcatcgccaaggcgtgattgaattgatgaagctgcaattaaaagag
catgtgaaagacctgaataaaggcttaccaagcttcacccaagccgccatgctgctgcgc
cacatcaatgccgataccttgcgcgaagacctcacccaagccgtgtgcgaccgtgccttt
atcggcgatgatgatttgccgcgcgatgaaaaagcgtttaaagaacaaatcaaacgcgcc
cgcagccgcctgcctgcggtaaaagaagccgtcagccgctacctgcaggaagtggccgct
gcctatgccgaactcaacagcaaactgggcaaacatccattgagccatctgctgcgccaa
cgcaccaacgccttgctggccgaaggcttcgccagccgcaccccatggcagcaatggccg
cgcctgccgatttatctcaaagccatgaccttgcgaatggacaaatacggcagcaatccc
gcacgcgaccaagcgcgtgaagccgagattcaagacttagagcaaatgtggcaggataaa
gtcgataccttgattaaacagggcttgcccgtgtcgtctgaaatcgatgcgtttaaatgg
atgattgaagaattgcgggtgtcgctgtttgcacaagaattgaaaacgccgcatcccgtt
tctgtgaaacgcctgttgaaagaatgggcgcaatgggcctga
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integrated database retrieval system
