Neisseria brasiliensis: GJV52_12970
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Entry
GJV52_12970 CDS
T06557
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nbl
Neisseria brasiliensis
Pathway
nbl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nbl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GJV52_12970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nbl03400
]
GJV52_12970
Enzymes [BR:
nbl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GJV52_12970
DNA repair and recombination proteins [BR:
nbl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GJV52_12970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
ERCC3_RAD25_C
AAA_30
CTE_SPB4
Motif
Other DBs
NCBI-ProteinID:
QGL26361
LinkDB
All DBs
Position
2596897..2600307
Genome browser
AA seq
1136 aa
AA seq
DB search
MTYPIPKPQEKTRWLNLSQGSLPLALARHLPHKQLKVVLIQDAEQALRLQTAWQFFRPHD
TAVFLPDWETLPYERFSPHHDLVSERLAALWQIKSGAADVLFVPVATAMQKLSPVSFLAG
RTFWLKTGQSLDLDALKGNLIEAGYSHVSNVVATGEFAVRGGIVDLFPMGSDMPYRLDLF
DDEIDSIKTFDPDTQRTVAPVSEIRLLPAHEFPTDDDAQKIFRSRFRDEIDADYHAAAVY
KAVSNGHFGAGVEYYLPLFFENELDTLFDYVGNDALFVCLGDVHAEAARFQSDVKSRYQM
AQGDETYPPLLPQHLYLTSDQFAGRLKAYAQVWPDVFSHDQNLPDVAVNRQAEQPLQALL
DFQTAFDGRILLCAESLGRRETMTGFMQQNCIKAKAVSDWQGFLSAHEPLMITVAPLAYG
FQLPEQNIAVITESDLYQYVAKSRKTNRRKKHADVSDGLLRDLAEINLGDPVVHEEHGIG
RYMGLVTMDLGGETAEMMLLEYAGEAQLYVPVSQLHLISRYSGHAHDNVQLHKLGTAAWN
KAKRKAAEKARDTAAELLNLYAQRAAQEGHKFDINELDYQAFADGFGYEETEDQAAAIAA
VIKDLTQGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFAD
RFADFPVKVASLSRFNNSKTTKAALEGMADGTVDIVIGTHKLVQDDIHFKNLGLVIIDEE
HRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVK
PFSEGSVREAVLRELKRGGQVFFLHNEVDTIENMRERLEVLLPEARIGVAHGQLRERELE
QVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAY
AYLLTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSGEMMQVGFT
LYTEMLKQAVRDLKKGRQPDLDAPLGVTTEIKLHSPALLPDDYCPDIHERLVLYKRLATA
ETREQINAIHEELVDRFGLTEPAVKTLIESHHLRLQAKEMGIAGIDATNEAMIITFGKNN
RIDPTEIIMLIQTNKKYRLAGADKLRYSAEMENIDVRINTVKDVLKTLKEKVLVAE
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgacttatccgattcccaaacctcaagaaaaaacccgttggctcaatctctcgcaaggc
tcattgccgttggctttggcacgccatttgccacacaagcagcttaaagtggtcttgatc
caagatgccgagcaagccttgcgccttcagacggcgtggcagtttttccggccacacgat
acggcggttttcctgcccgattgggaaacgctgccctacgagcgtttttcgccgcatcac
gatttggtgtcggaacgcttagcggctttatggcagattaaaagcggcgcggcggatgtg
ctatttgtgccggtggcaacggcgatgcagaaattatcgccggtgtccttcttggccgga
cgcacgttttggctgaagaccggccaatctttggatttagacgcgctcaaaggtaatttg
attgaagccggttacagccatgtatcgaatgtggtggccacgggtgaatttgccgtgcgc
ggcggcattgtcgatttgttcccaatgggcagcgacatgccctaccgcttggatttgttt
gacgacgaaatcgacagcatcaaaacctttgatcccgacacccagcgcaccgtcgcgccg
gtcagcgaaatccgccttctgcccgcgcacgaattccctaccgacgacgatgcgcaaaaa
atcttccgcagccgtttccgcgatgaaatcgatgccgactatcacgcagcggcggtgtat
aaagcggtgagcaacggccatttcggcgcaggcgtggaatattatctgccgctgtttttt
gaaaacgagttggatacgctgtttgactatgtcggcaatgatgcactgtttgtctgcttg
ggcgatgtgcatgccgaagccgcgcgttttcaaagcgatgtcaaatcacgctaccaaatg
gcacaaggcgatgagacttacccgcctttgcttccacagcatttgtatctcacctccgac
caattcgcaggccgtctgaaagcatatgcccaagtgtggccggatgtgttcagtcacgac
caaaacctgcccgatgttgcggtcaaccgccaagcagaacaacctcttcaagccctgctc
gattttcagacggcttttgacgggcgtattttgttatgcgccgaaagtctcggccgccgc
gaaaccatgaccggctttatgcagcaaaactgtatcaaagccaaagccgtgagcgattgg
caaggctttttatcggcacacgagcctttaatgattaccgtggcaccgctggcttacggt
ttccagttgcccgagcaaaacatcgccgtaattaccgaatcggatttgtatcaatacgtc
gccaaatcccgcaaaaccaaccgccgcaaaaaacacgccgatgtttcagacggcctgttg
cgcgatttggccgaaatcaaccttggcgatccggtggtgcacgaagaacacggcatcggc
cgctatatgggtttggttaccatggatttgggcggcgaaaccgccgaaatgatgctgctc
gaatacgcgggcgaagcgcaattgtatgtgccggtgtcgcagttgcacctcatcagccgc
tattccggccacgcgcacgataatgtgcaattacacaaactcggcaccgcagcatggaac
aaagccaaacgcaaagccgccgaaaaagcgcgtgacaccgctgccgaattgctcaacctc
tacgcccaacgcgccgcacaggaaggccataaattcgacatcaacgaattggattaccaa
gcctttgctgatggtttcggctatgaagaaaccgaagaccaagccgccgccattgctgca
gtgattaaggatttgacccaaggcaagccgatggacagattggtgtgcggcgatgtcggt
ttcggcaaaactgaagtggctttacgtgccgcatttgtggcggtgatgggcggcaaacaa
gtggccgtgttggcaccgaccacgcttttggtcgaacaacacgcgcaaaattttgccgac
cgcttcgccgattttccggttaaagtggcatctttatcgcgcttcaacaacagcaaaacc
accaaggccgccttggaaggcatggccgacggcacggtcgatatcgtgattggcacgcat
aaactggtgcaggatgacatccactttaaaaatctcggcttggtgattatcgatgaagaa
caccgcttcggcgtgcgccaaaaagagcagctcaaacgcctgcgcgcgaatgtcgacatc
ctcaccatgaccgccaccccgattccgcgcaccttaagcatggcattggaaggcttgcgc
gatttttcgttaattaccaccgcaccgagccgccgcttggccgtcaaaacctttgtcaaa
ccgttcagcgaaggcagcgtgcgcgaagccgtgttgcgcgaattgaaacgcggcggtcag
gtgtttttcctgcacaacgaagtcgataccatcgaaaacatgcgcgaacgcttggaagtc
ctgttgcccgaagcccgtatcggcgtggcacacggccaattgcgtgaacgcgagttggaa
caagtgatgcgcgactttttacagcaaaggtttaacgtgttgctctgctcgaccattatc
gaaaccggcatcgacatccccaacgccaacaccatcatcatcaaccgcgccgataaattc
ggcttggcgcaactgcaccaactgcgcggacgcgtcggccgcagccaccaccaagcctac
gcctacctgctcacccccgaatacatcaccaaagatgccgaaaaacgcttggatgcgatt
gccgccgccgatgaattgggtgccggtttcaccctcgccatgcaggatttggaaatccgc
ggcgcaggcgaaatcttgggtgaaggccaaagcggcgagatgatgcaggtcggcttcacg
ctgtataccgagatgctcaagcaagccgtgcgcgatttgaaaaaaggccgccagcctgat
ttggatgcgccgctgggtgtgactaccgaaatcaagctgcacagccctgcgctgctgccc
gatgattactgccccgacattcacgaacgcttggtgctctacaaacgcttggccaccgcc
gaaacgcgcgaacaaatcaacgccattcacgaagaattggtcgaccgcttcggcctgacc
gaacctgccgtgaaaaccttgattgaaagccaccatttgcgtttgcaagccaaagaaatg
ggtattgccggcatcgatgccaccaatgaagcgatgatcatcacgttcggtaaaaacaac
cgcatcgacccgaccgaaatcatcatgctgattcaaaccaacaaaaaataccgcttggcc
ggtgccgacaagttgcggtatagcgcggaaatggaaaatatcgatgtgcggattaacacg
gtgaaggacgtgttgaagactttgaaagaaaaagtattggtggctgaataa
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