Nocardia brasiliensis: O3I_035480
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Entry
O3I_035480 CDS
T02270
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nbr
Nocardia brasiliensis
Pathway
nbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O3I_035480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nbr03019
]
O3I_035480
03009 Ribosome biogenesis [BR:
nbr03009
]
O3I_035480
Enzymes [BR:
nbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O3I_035480
Messenger RNA biogenesis [BR:
nbr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O3I_035480
Ribosome biogenesis [BR:
nbr03009
]
Prokaryotic type
rRNA helicases
O3I_035480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
UvrA_inter
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
AFU05043
UniProt:
K0EYP1
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All DBs
Position
8001485..8003266
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AA seq
593 aa
AA seq
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MSTNQVDSVPGDNDRDNDGPTFADLGIDDRILAAIADVGYESPSPIQAATIPPLLSGADV
VGLAQTGTGKTAAFAIPILMGLDTSGKLPQSLVLAPTRELAIQVAEAFGRYATHIPGLHV
LPIYGGQAYGVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLSQLKYLVLDEADEMLKMGF
QEDVERILKDTPAGKQVALFSATMPAAIRKISKQYLNDPVEITVKSKTSTATNITQRWVQ
VSHQRKLDALTRILEVESFEAMIIFVRTKQATEELAEKLRARGFSAAAINGDIAQNQRER
TIGHLKSGTLDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAL
LFVAPRERHLLKSIERATRHPLEEMQLPSVDDVNAQRVAKFGDDITESLTSANLALFRRL
IEDYEREHDIPLVDIAAALAVLSRDGDNFLMQPEPPEPVRERRERPRRFEGDDDRSGFGA
HQRQTGAELATYRISVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPANL
PPETLEALRRTRISGVLIQLTPDQGPPGQRSFPRGPRREGGNGKRPERRKPRS
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccaatcaggtcgacagcgttcctggcgacaacgacagggacaacgacggcccg
actttcgccgatctcggcatcgatgaccgcatcctcgcggccatcgccgatgtgggctac
gagtcgccgtcgccgattcaggctgcgacgattccgccgctgctgtcgggcgccgatgtg
gtcggcctcgcgcagaccggcaccggcaagaccgcggcattcgcgatcccgatcctgatg
ggtctggacacttccggcaaacttccgcagtcgctggtgctggcgccgacccgggagctc
gcgatccaggtggccgaggcgttcggccgctacgccacgcatatcccggggctgcacgtg
ctgccgatctacggcggccaggcctacggggtccagctgtccggcctgcgccgcggcgcg
cacgtggtggtcggcacgcccggccgcgtgatcgatcatctggaaaagggcacgctcgac
ctgtcgcagctgaagtatctggtgctcgacgaggccgacgagatgctgaagatgggcttc
caggaggacgtcgaacgcatcctcaaggacacgcccgcgggcaagcaggtcgcgctgttc
tccgccaccatgcccgcggcgatccgcaagatctccaagcagtacctcaacgatccggtc
gagatcaccgtcaagtcgaagacctcgaccgccaccaacatcacccagcgctgggtgcag
gtctcgcatcagcgcaagctggacgcgctcacccggatcctcgaggtcgagtcgttcgag
gcgatgatcatcttcgtgcgcaccaagcaggccaccgaggagctcgccgaaaagctgcgc
gcccggggcttttccgcggccgcgatcaacggtgacatcgcgcagaaccagcgcgagcgc
accatcggtcacctgaagtcgggcacgctggacatcctcgtcgccaccgacgtcgccgcg
cgcggcctcgacgtggaccgcatctcgcacgtggtcaactacgacatcccgcacgacacc
gagtcctacgtgcaccgcatcggccgtaccggccgggccgggcgcagcggcgaggcgttg
ctgttcgtcgccccgcgcgaacggcacctgctcaagtcgatcgagcgggccacccgccat
ccgctcgaagagatgcagctgcccagcgtcgacgacgtcaacgcccagcgcgtcgccaag
ttcggcgacgacatcaccgagagcctgacctcggcgaacctcgcgctgttccgcaggctc
atcgaggattacgaacgcgagcacgatattccgctggtcgatatcgcggcggcgctggcc
gtgctctcccgcgacggcgacaacttcctgatgcagcccgaaccgccggagccggtgcgc
gagcgccgggaacgcccgcgccggttcgaaggtgacgacgaccgttccggtttcggcgcg
catcagcggcagaccggtgccgaactcgcgacctatcggatcagcgtcggcaagcgccac
cgcgtggtgcccggcgcgattgtcggcgccatcgccaacgagggtgggctgcggcgcagc
gacttcgggcacatcagcatccgcccggaccacagcctggtcgagctacccgcgaacctg
ccgccggaaacgctggaagcgttgcggcgcaccaggatcagcggcgtgctcattcagctc
acgcccgatcagggtccgccgggacagcgctcgtttccgcgtgggccgcgccgggaaggc
ggcaacggcaagcgcccggaacggcgtaagccacgctcctga
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