KEGG   Nocardia brasiliensis: O3I_035480
Entry
O3I_035480        CDS       T02270                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
nbr  Nocardia brasiliensis
Pathway
nbr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nbr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    O3I_035480
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nbr03019]
    O3I_035480
   03009 Ribosome biogenesis [BR:nbr03009]
    O3I_035480
Enzymes [BR:nbr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     O3I_035480
Messenger RNA biogenesis [BR:nbr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     O3I_035480
Ribosome biogenesis [BR:nbr03009]
 Prokaryotic type
  rRNA helicases
   O3I_035480
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_19 UvrA_inter Cas3-like_C_2 HEM4
Other DBs
NCBI-ProteinID: AFU05043
UniProt: K0EYP1
LinkDB
Position
8001485..8003266
AA seq 593 aa
MSTNQVDSVPGDNDRDNDGPTFADLGIDDRILAAIADVGYESPSPIQAATIPPLLSGADV
VGLAQTGTGKTAAFAIPILMGLDTSGKLPQSLVLAPTRELAIQVAEAFGRYATHIPGLHV
LPIYGGQAYGVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLSQLKYLVLDEADEMLKMGF
QEDVERILKDTPAGKQVALFSATMPAAIRKISKQYLNDPVEITVKSKTSTATNITQRWVQ
VSHQRKLDALTRILEVESFEAMIIFVRTKQATEELAEKLRARGFSAAAINGDIAQNQRER
TIGHLKSGTLDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAL
LFVAPRERHLLKSIERATRHPLEEMQLPSVDDVNAQRVAKFGDDITESLTSANLALFRRL
IEDYEREHDIPLVDIAAALAVLSRDGDNFLMQPEPPEPVRERRERPRRFEGDDDRSGFGA
HQRQTGAELATYRISVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPANL
PPETLEALRRTRISGVLIQLTPDQGPPGQRSFPRGPRREGGNGKRPERRKPRS
NT seq 1782 nt   +upstreamnt  +downstreamnt
atgagtaccaatcaggtcgacagcgttcctggcgacaacgacagggacaacgacggcccg
actttcgccgatctcggcatcgatgaccgcatcctcgcggccatcgccgatgtgggctac
gagtcgccgtcgccgattcaggctgcgacgattccgccgctgctgtcgggcgccgatgtg
gtcggcctcgcgcagaccggcaccggcaagaccgcggcattcgcgatcccgatcctgatg
ggtctggacacttccggcaaacttccgcagtcgctggtgctggcgccgacccgggagctc
gcgatccaggtggccgaggcgttcggccgctacgccacgcatatcccggggctgcacgtg
ctgccgatctacggcggccaggcctacggggtccagctgtccggcctgcgccgcggcgcg
cacgtggtggtcggcacgcccggccgcgtgatcgatcatctggaaaagggcacgctcgac
ctgtcgcagctgaagtatctggtgctcgacgaggccgacgagatgctgaagatgggcttc
caggaggacgtcgaacgcatcctcaaggacacgcccgcgggcaagcaggtcgcgctgttc
tccgccaccatgcccgcggcgatccgcaagatctccaagcagtacctcaacgatccggtc
gagatcaccgtcaagtcgaagacctcgaccgccaccaacatcacccagcgctgggtgcag
gtctcgcatcagcgcaagctggacgcgctcacccggatcctcgaggtcgagtcgttcgag
gcgatgatcatcttcgtgcgcaccaagcaggccaccgaggagctcgccgaaaagctgcgc
gcccggggcttttccgcggccgcgatcaacggtgacatcgcgcagaaccagcgcgagcgc
accatcggtcacctgaagtcgggcacgctggacatcctcgtcgccaccgacgtcgccgcg
cgcggcctcgacgtggaccgcatctcgcacgtggtcaactacgacatcccgcacgacacc
gagtcctacgtgcaccgcatcggccgtaccggccgggccgggcgcagcggcgaggcgttg
ctgttcgtcgccccgcgcgaacggcacctgctcaagtcgatcgagcgggccacccgccat
ccgctcgaagagatgcagctgcccagcgtcgacgacgtcaacgcccagcgcgtcgccaag
ttcggcgacgacatcaccgagagcctgacctcggcgaacctcgcgctgttccgcaggctc
atcgaggattacgaacgcgagcacgatattccgctggtcgatatcgcggcggcgctggcc
gtgctctcccgcgacggcgacaacttcctgatgcagcccgaaccgccggagccggtgcgc
gagcgccgggaacgcccgcgccggttcgaaggtgacgacgaccgttccggtttcggcgcg
catcagcggcagaccggtgccgaactcgcgacctatcggatcagcgtcggcaagcgccac
cgcgtggtgcccggcgcgattgtcggcgccatcgccaacgagggtgggctgcggcgcagc
gacttcgggcacatcagcatccgcccggaccacagcctggtcgagctacccgcgaacctg
ccgccggaaacgctggaagcgttgcggcgcaccaggatcagcggcgtgctcattcagctc
acgcccgatcagggtccgccgggacagcgctcgtttccgcgtgggccgcgccgggaaggc
ggcaacggcaagcgcccggaacggcgtaagccacgctcctga

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