Nocardioidaceae bacterium TYQ2: KLP28_03255
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Entry
KLP28_03255 CDS
T08881
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nbt
Nocardioidaceae bacterium TYQ2
Pathway
nbt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nbt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KLP28_03255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nbt03019
]
KLP28_03255
03009 Ribosome biogenesis [BR:
nbt03009
]
KLP28_03255
Enzymes [BR:
nbt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KLP28_03255
Messenger RNA biogenesis [BR:
nbt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KLP28_03255
Ribosome biogenesis [BR:
nbt03009
]
Prokaryotic type
rRNA helicases
KLP28_03255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
HEM4
AIRS_C
UvrA_inter
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
QWC85784
UniProt:
A0A975MHU0
LinkDB
All DBs
Position
complement(688197..690071)
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AA seq
624 aa
AA seq
DB search
MPPRRASSACDGPRVPAIRARSRRGPTLGGCCARRSVTDPQTPDAAPVDFASLGLSRPVL
EALTEVGYETPSPIQAATIPALMDGRDVVGLAQTGTGKTAAFALPLLSRMEVSRKGGRAP
QALVLAPTRELALQVAEAFERYAAHVNLQVLAVYGGQAYGVQLSALRRGVDVVVGTPGRI
MDHLEKGTLDLTELRYLVLDEADEMLNMGFAEDVETILADTPGDKQVALFSATMPRTIRR
LAQQYLTEPAEISVKEKTQTATNIRQRWLLVSWPQKVEAMTRLLEVENFEGMIVFVRTKQ
ATEEVAEKLRARGFSAAAINGEVPQNQRERLVKSLREAKLDILVATDVAARGLDVERITH
VVNFDIPTDTESYVHRIGRTGRAGREGDAISFVTPRERHLLRMIEKGTRQSITEIAMPTA
EDVNDSRVRGFTEAISTALESPQVSSFRDLIAAYVDERDVTPVDVAAALAVMAHDGQPLL
LEPDPPPAPRAKRADRPPRTDRDDRSPRGDRGAKGSKPPRQVPSGLARYRIEVGKRHHVQ
PRQIVGALANEGGLGRNDFGHIDIRVSYSLVELPRDLSAETVDRLRGTRISGRLIELKPD
AGPAPRRDGDGGHPHRSKKPRHKD
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctcgacgcgcgtcgtccgcctgtgacgggcctcgcgtgcccgcgattcgggcc
aggagccgtcgaggccctaccctggggggatgctgtgcgagacgctccgtgactgatccc
cagactccggacgccgcgccggtcgacttcgcctcgctgggcctgagccgtcctgtgctc
gaggcgttgaccgaggtgggctacgagaccccctccccgatccaggcggccacgatcccg
gcgctcatggacggccgcgacgtcgtcggtctggcgcagaccggcacgggcaagacggcc
gcgttcgcgctgcccctgctctcccgcatggaggtctcccgcaagggcggtcgcgcgccc
caggcgctcgtgctcgcgccgacgcgcgagctcgccctgcaggtcgccgaggccttcgag
cggtacgcggcccacgtgaacctgcaggtgctcgcggtctacggcggtcaggcgtacggc
gtgcagctctccgccctgcgtcgcggcgtcgacgtcgtcgtcggcacgccgggtcgcatc
atggaccacctcgagaagggcacgctcgacctcaccgagctccgctacctggtgctcgac
gaggccgacgagatgctcaacatgggctttgccgaggacgtcgagacgattctggccgac
accccgggtgacaagcaggtcgcgctgttctccgcgacgatgccgcgcaccatccgccgg
ctggcccagcagtacctcaccgagcccgcggagatctccgtcaaggagaagacgcagacc
gcgaccaacatccggcagcgctggctgctggtgtcgtggccgcagaaggtcgaggcgatg
acgcgcctgctcgaggtggagaacttcgagggcatgatcgtcttcgtccgcaccaagcag
gccaccgaggaggtcgccgagaagctgcgggcccgcggcttctccgccgcggcgatcaac
ggcgaagtgccgcagaaccagcgcgagcgtctggtgaagtcgctgcgtgaggccaagctg
gacatcctggtggcgaccgacgtcgctgcccgaggtctcgacgtggagcgcatcacgcac
gtcgtcaacttcgacatccccaccgacaccgagtcctacgtgcaccgcatcgggcgtacg
ggccgcgcgggccgcgagggcgacgcgatcagcttcgtgacgccccgcgagcgtcacctg
ctccgcatgatcgagaagggcacgcggcagtcgatcaccgagatcgccatgccgaccgcc
gaggacgtcaacgactcgcgcgtccgcggcttcaccgaggcgatctccacggcgctggag
tcgccgcaggtgagctccttccgcgacctgatcgcggcgtacgtggacgagcgcgacgtg
acacccgtcgacgtcgccgcggcgctcgccgtgatggcacacgacggtcagccgctgctc
ctcgagcccgacccgccgccggcgccgagggccaagcgggccgaccgcccgccgcgtacg
gaccgggacgaccggtcgccccggggagacaggggagccaaggggtccaagccgcctcgg
caggtgccgtcggggctggcgcgctaccgcatcgaggtcggcaagcgtcaccacgtgcag
ccgcgtcagatcgtcggcgcgctggccaacgagggcggcctgggccgcaacgacttcggg
cacatcgacatccgggtctcctacagcctcgtcgagctgccccgcgacctgtcggcggag
accgtcgaccggctccgcggcacgcgcatctcgggtcgcctcatcgagctgaagcccgac
gccgggccggcaccgcgccgtgacggcgacggcgggcacccacaccgctccaagaaaccg
cgccacaaggactga
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