Nocardioidaceae bacterium TYQ2: KLP28_15480
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Entry
KLP28_15480 CDS
T08881
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
nbt
Nocardioidaceae bacterium TYQ2
Brite
KEGG Orthology (KO) [BR:
nbt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nbt03019
]
KLP28_15480 (hrpA)
Enzymes [BR:
nbt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KLP28_15480 (hrpA)
Messenger RNA biogenesis [BR:
nbt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KLP28_15480 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
HA2_N
NACHT
AAA_30
nSTAND3
T2SSE
SLFN-g3_helicase
ResIII
PhoH
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QWC84927
UniProt:
A0A975R6L0
LinkDB
All DBs
Position
3227370..3231143
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AA seq
1257 aa
AA seq
DB search
MPVTYPAQLPVSARREDIAAAIRDHQVVVVAGETGSGKTTQLPKICLDLGRGSRRRIGHT
QPRRIAARSVAERIASELGSELGETVGYQVRFTDKTSAASSVKVMTDGILLAELQHDRDL
LAYDTLIIDEAHERSLNIDFILGYLKRLLPRRPDLKVVITSATIDPERFARHFADAAGEP
APVIEVSGRTYPVEVRYRPLMLEVDESDDPDEEGELVVRDQTEAVADAVTELCAEGQGDI
LVFLPGEREIRDTAEELEALAARTRPGFDVLPLYARLSAAEQHRVFAPHTRRRVVLATNV
AETSLTVPGIRYVIDSGVARISRYSTRSKVQRLPIEPISQASARQRAGRCGRVEAGICIR
LYAEEDFEGRPEFTDPEILRTNLASVILQMASLRLGEVERFPFVEPPDRRNVRAGVELLT
ELGAVAPAASGASGGQVRLTNTGRRLARLPIDPRLARMILEADRRGCLREVLVIAAALSV
QDPRERPVEKQAQADQLHARFKDPSSDFLTWLTLWRHLRERQQAQGSSAFRREVRGEFLN
YVRIREWQDYESQLRRVAKDIGLTVGQPADEPDADAIHQSLLAGLLSHVGLRDAETRDYL
GARGTRFSIFPGSGLAKKQPQLVMAAELVETSRLFGRTNAGIKAEWAERLGAHLVKRSYA
EPHWSRKRAAVVARERVTLYGVPLVADRLVQYGTVDRELSRELFIRHALVYGEWSTRQRF
FHHNRELLEEVGELEHRARRRDLVVDEHTMFDFYDERVGADVVSGAHFDSWWKQVRREQP
DLLTFDPAMLVNEAAAGITDEQFPTSWRSEDLTLPIDYRFEPGSAHDGLTIEVPVAVLNR
VGADQFSWLVPGLREELVIALLRSLPKNLRTSFVPAPDHAARFLAEVPAGEEPLLDALER
WCRATTGVHVPREAWDLSRLPDHLRPTYAVVDASGARVGEGKDLDALKAPLRGSFDDAIA
EVAAEAGMRRSGMTTWEVGTLERTVTTVRAGQEVRVHPALVDEGTTVGLRVCGSTAEQEA
VHREGVRRLALLAAPSVRRTLKDALDNTAKLEIAGTPYASVGDLLADCGAAVVTDLVDEA
LTAEGGVWDRAAYDALVARVRAEVPARASEVLAEVRRVLAAWREADRALTGRADIAQLPA
LTDMRAQVARLVHDGFVGEVGAARLRHLARYLRAVGLRRARLEQAPTDDRRKHEAVAPLQ
QSWLHRVEALPAGRPPGASLREARWLIEEYRVSLWAQQLGTAQKVSDKRIRTALDGS
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
gtgccggtgacctacccggcgcagctgccggtcagcgcccgccgcgaggacatcgccgcg
gcgatccgcgaccaccaggtcgtcgtggtcgccggcgagacggggtcgggcaagaccacc
cagctgccgaagatctgcctcgacctcggccgtggcagcagacgacgcatcgggcacacc
caaccccgccgtatcgccgcgcgcagcgtcgccgagcgcatcgcgagcgagctcggcagc
gagctgggcgagacggtcggctaccaggtgcgcttcaccgacaagacctcggcggcctcc
agcgtgaaggtgatgaccgacggcatcctcctcgcggagctgcagcacgaccgggacctg
ctggcgtacgacaccctgatcatcgacgaggcgcacgagcgcagcctcaacatcgacttc
atcctgggctacctcaagcgactgctgccccggcgcccggacctgaaggtcgtcatcacc
tccgcgaccatcgaccccgagcggttcgcgcgacacttcgccgacgcggcgggcgagccg
gcgccggtcatcgaggtgtcggggcgtacgtacccggtcgaggtccgctaccggccactg
atgctggaggtcgacgagagcgacgacccggacgaggagggcgagctcgtcgtccgcgac
cagaccgaggcggtcgcggacgcagtgacggagctgtgcgccgaggggcagggcgacatc
ctcgtgttcctgcccggcgagcgggagatccgcgacaccgccgaggagctggaggcactg
gccgcgcgcacccgacccgggttcgacgtgctgcccctgtacgcacggctctccgccgcg
gagcagcaccgggtcttcgcaccgcacaccagacgccgcgtcgtgctcgccacgaacgtc
gcggagacctcgctgacggtgcccggcatccggtacgtcatcgactccggcgtcgcgcgc
atctcgcgctactccacgcgcagcaaggtgcagcgcctgccgatcgagccgatcagccag
gcctcggcacgccagcgggccggacggtgcggccgggtggaggccggcatctgcatccgc
ctgtacgccgaggaggacttcgagggacgcccggagttcaccgatcccgagatcctgcgc
accaacctcgcgtccgtgatcctccagatggcctcgctgcggctgggagaggtcgaacgg
ttccccttcgtcgagccaccggaccgacgcaacgtacgggcaggcgtggagctgctgacc
gagctgggggccgtcgcccccgccgcctccggggcatccgggggacaggtgcgtctcacg
aacaccggccgtcggctcgcccggctgccgatcgacccgcgcctggcccgcatgatcctg
gaggcggaccgtcgggggtgcctgcgtgaggtgctggtcatcgcggcggccctgtcggtg
caggacccccgggagcgcccggtggagaagcaggcgcaggccgaccagctgcacgcccgc
ttcaaggacccgagcagcgacttcctcacctggctcacgctgtggcgtcacctgcgggag
cggcagcaggcgcaggggtcctcggcgttccggcgcgaggtgcggggcgagttcctcaac
tacgtacgcatccgggagtggcaggactacgagtcgcagctgcgtcgcgtggccaaggac
atcggtctgaccgtggggcagccggccgacgagccggacgccgacgccatccaccagtcg
ctgctcgccgggctgctgtcccacgtcgggctgcgggacgccgagacccgcgactacctc
ggtgcgcggggcacgcgcttctcgatcttccccgggtcgggcctggcgaagaagcagccg
cagctggtgatggcggcggagctggtggagacctcgcgcctgttcggacgtaccaacgcc
ggcatcaaggcggagtgggccgagcggctcggggctcacctcgtcaagcggtcgtacgcc
gagccgcactggtcccgcaagcgcgccgcggtggtcgcccgcgagcgggtgacgctctac
ggcgtcccgctggtcgccgaccggctcgtgcagtacggcacggtcgaccgcgagctctcc
cgcgagctgttcatccgccacgcgctcgtctacggcgagtggtcaacgcggcagcggttc
ttccaccacaaccgtgagctgctggaggaggtgggcgagctcgagcaccgtgcccgacgc
cgcgatctcgtcgtcgacgagcacacgatgttcgacttctacgacgagcgtgtcggcgcc
gacgtcgtctcaggcgctcacttcgactcctggtggaagcaggtgcgccgcgagcagccc
gacctgctgaccttcgaccccgcgatgctcgtcaacgaggccgcggccggcatcaccgac
gagcagttcccgaccagctggcgcagcgaggacctcaccctgccgatcgactaccgcttc
gagccggggtcggcccatgacggcctgacgatcgaggtgcccgtggcggtgctgaaccgg
gtgggggccgaccagttctcctggctggtcccgggactgcgcgaggagctggtgatcgcc
ctgctccggtcgctgccgaagaacctgcgcacgtcgttcgtcccggcgcccgaccacgca
gctcggttcctcgccgaggtgccggcgggggaggagcccctgctcgacgccctggagcgc
tggtgccgcgccacgaccggcgtgcacgtgccccgggaggcgtgggacctctcgcggctc
cccgaccatctccgtccgacgtacgcggtcgtcgatgcctcgggcgcgcgtgtcggggag
ggcaaggacctcgatgcgctcaaggctccgttgcgcggctccttcgacgacgccatcgcc
gaggtcgccgccgaggcggggatgcggcgcagcgggatgacgacctgggaggtcgggacg
ctcgagcgcactgtgacgacggtccgggcgggccaggaggtgcgggtgcaccccgccctg
gtcgacgagggcaccaccgtgggtctgcgggtgtgcgggtcgaccgccgagcaggaggcg
gtgcaccgcgagggcgtacgccgtctcgccctgctcgccgccccctcggtgcgtcggacg
ctcaaggacgcgctggacaacaccgcgaagctggagatcgcgggcaccccgtacgcctcg
gtcggcgacctcctcgccgactgcggtgccgccgtggtcaccgacctcgtcgacgaggcg
ctcaccgccgagggcggggtgtgggaccgggccgcgtacgacgccctcgtggccagagtg
cgtgccgaggtgccggcacgtgcgtcggaggtgctcgccgaggtgcgccgcgtgctcgcc
gcgtggcgtgaggccgaccgggccctgacggggcgggccgacatcgcccagctgccggcg
ctgaccgacatgcgggcccaggtggcccggttggtgcacgacgggttcgtcggtgaggtc
ggggcggcacggctgcgacacctcgcgcgctacctgcgggcggtcggtctgcggcgcgcg
cgcctggagcaggcgccgaccgacgaccggcgcaagcacgaggccgtggcgccgctgcag
caatcgtggctgcaccgggtcgaggcgctgcccgcagggcggccgcccggagcgtcgctg
cgcgaggcccggtggctcatcgaggagtaccgcgtctcgctgtgggcgcagcagctcggc
accgcgcagaaggtgtcggacaagcgcatccgtacggcgctggacggcagctga
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