Candidatus Nitrosopelagicus brevis: T478_0008
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Entry
T478_0008 CDS
T03537
Name
(GenBank) base excision DNA repair protein, HhH-GPD family
KO
K01247
DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
nbv
Candidatus Nitrosopelagicus brevis
Pathway
nbv03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nbv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
T478_0008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nbv03400
]
T478_0008
Enzymes [BR:
nbv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
T478_0008
DNA repair and recombination proteins [BR:
nbv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
T478_0008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
RIO1
Pkinase
Pox_H7
ABC1
Motif
Other DBs
NCBI-ProteinID:
AJA92320
UniProt:
A0A0A7V6K9
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Position
complement(5046..6413)
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AA seq
455 aa
AA seq
DB search
MTQRFQQISIFEEEPYNKILCFPKVKESEVKKRLNELKKIGVTHVSFTGPLQIEKCHILG
KGYVGMVVLAKKNNEIVALKIRRIDSPRENMSNEAKLLQIVNKLDIGPKFIKNSKNFLVM
EYIDGEKIIDWAKKTETKSQEVRSVLNNVLRECYLLDDAGLDHGELSTIDKHVIVGKNKN
TIIDFESSSTNRKPSNVTGATQGILIGTGLAKIIQKKIKLPPKETIINLIRQYKKNPNLE
NFEKITIGLKLQTPGRFEKEVSLLRSDKKLGPLIRRIGPCSMRITKNPFQTLVEAIIYQQ
LSEASATAITKRFLKLYKKFPTPRQVNNTTDKKLKDIGLSGTKINYIKGLSKLIIQKKID
FKKIAKLNDQQVIEELTKIKGIGNWTTQIYLMFCLQRKDVFPVGDLGIQKGIRDLFSLKE
LPDPKTMEKFSARWKPNRSIACWYIWKSQRINSIG
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgacacaacgttttcagcaaattagtatattcgaagaggaaccatacaacaaaattcta
tgttttccaaaagtaaaagaatctgaagtcaaaaaacgccttaatgaattaaaaaaaata
ggcgttacacatgtttcatttaccggtccattacaaattgaaaaatgtcacatacttgga
aaaggctatgttggaatggttgttcttgcgaaaaaaaacaatgagattgttgcattaaaa
atcaggagaatagattcgccaagagagaatatgtcaaatgaagctaaattgcttcaaatt
gtaaacaaattagacatcggtccaaaatttatcaaaaattcaaaaaattttttggtaatg
gaatacattgacggtgaaaaaattattgattgggcgaagaaaacggagacaaaatctcaa
gaagttcgttctgttctgaataatgttttgagagaatgttatcttttagatgatgcagga
ttagatcatggagaattaagtactatagacaaacatgtgatagttggaaaaaataaaaat
acaattatagattttgaaagttccagtactaacagaaaaccatcaaatgtaacaggtgca
acgcaaggaatcctaattggaacaggattagctaaaattattcaaaaaaaaataaaatta
cctccaaaagaaaccataatcaatctaattcgacagtacaagaaaaatccaaacttggaa
aattttgagaaaattactataggtttgaaactacaaaccccaggtagattcgaaaaagaa
gtgtcattattacgttcagacaagaaacttggaccactaatcagaagaattggaccgtgt
agtatgcgaataacaaaaaatccgtttcaaacattggtagaggcaataatttatcagcaa
ttatcagaagcttctgccacagcaatcactaagagatttctaaaactttacaaaaaattc
cctacaccaagacaggtgaataatacaactgataagaaattaaaagacataggactttca
ggaacaaaaatcaattacattaaaggattatcaaagctaattattcaaaaaaaaatagat
tttaaaaaaattgcaaagctcaatgaccagcaagttattgaagagttgacaaaaatcaag
gggataggaaattggaccacgcaaatttatctcatgttttgtttacaaagaaaagatgtt
tttccagtaggcgatttaggaatacaaaagggaattagagatttattttcattaaaggag
ctaccagatccaaaaactatggaaaaattttctgccaggtggaagccaaatcgtagtatt
gcatgctggtatatttggaagagtcagagaattaattctataggttaa
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