Candidatus Nitrosopelagicus brevis: T478_0010
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Entry
T478_0010 CDS
T03537
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
nbv
Candidatus Nitrosopelagicus brevis
Brite
KEGG Orthology (KO) [BR:
nbv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nbv03016
]
T478_0010
Enzymes [BR:
nbv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
T478_0010
Transfer RNA biogenesis [BR:
nbv03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
T478_0010
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Motif
Pfam:
LigT_PEase
AKAP7_NLS
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AJA92306
UniProt:
A0A0A7V286
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All DBs
Position
complement(7725..8264)
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AA seq
179 aa
AA seq
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MRVFVAIEISKTQILENIKKFQENVKIDAKPTRTDQIHFTLQFLGEVDEILCEKIKKSLN
EISFSEFEISLNGVGGFPNLKNPRVIWIGIEKNGAEKLISLAKEVEMKLISLGFEQDKKF
KPHLTVFRVKKRIGDVSSIMKDFETTNFGAEMVSKIKLKKSVLSPKGPEYSDLLEVNAK
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
atgagagtctttgttgcaattgagatttctaaaactcaaattttagaaaatattaagaaa
tttcaagaaaatgtgaagatagatgcaaagcctacaagaactgatcagattcattttaca
ttacaatttctaggagaagttgatgaaatattatgtgaaaaaataaaaaaatcattgaat
gaaatatctttttctgaatttgaaatatctttgaatggtgtcggggggtttccaaattta
aaaaacccgagagtaatttggattggaattgaaaaaaatggtgcagaaaagctaatttca
ttagcaaaagaagtagaaatgaaattaatttcattaggttttgaacaagataaaaaattc
aaacctcacttgacggtttttagagtaaaaaagcgcattggagatgtttcatctataatg
aaagattttgagactacaaattttggtgctgagatggtatcaaaaattaagttaaaaaaa
agcgttttaagtccaaagggaccagaatattcagatttactggaggttaatgcaaaatga
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