Candidatus Nitrosopelagicus brevis: T478_0274
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Entry
T478_0274 CDS
T03537
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit B
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
nbv
Candidatus Nitrosopelagicus brevis
Pathway
nbv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nbv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
T478_0274 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nbv03021
]
T478_0274 (rpoB)
Enzymes [BR:
nbv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
T478_0274 (rpoB)
Transcription machinery [BR:
nbv03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
T478_0274 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
FtrD-like
Ribosomal_L37e
Motif
Other DBs
NCBI-ProteinID:
AJA92775
UniProt:
A0A0A7V7X5
LinkDB
All DBs
Position
235041..238388
Genome browser
AA seq
1115 aa
AA seq
DB search
MAENYNQRWPVIQDILRREGIARQHLTSFDEFLDNGLQSIIQEVGQIEIENAEYPYKIQL
GKIKLQQPRMMELDGSITHVTPAEARLRNISYVAPIMMEASVVEDGKTLETRFVHIGDMP
VMVKSHACILNTFTDQKLIDHQEDPRDPGGYFIINGSERVVVGLEDLSYNKIIVDAEKVG
GKIVHKAKVYSSIIGYRAKLELIMKDDGMIVAKIPGSPVDIPVVTLMRALGLESDKDIAG
AVSLVDEIQDHLEGSFEKAGDVPTSKDAIVYISKRIAPGMLEEFQIKRAETLLDWGLLPH
LGKHPENRKEKAHFMGEAACKLLELKLGWIDPDDKDHYGNKVIKFAGQMLADLFRTAFRN
LVRDMKYQLERSGQKRGINAVAAAIRPGIVSDKLNNAIATGNWGRGRVGVTQLLDRTNYL
STISHLRRVQSPLSRTQPNFEARDLHSTHFGRICPSETPEGSNCGLVKNLALSAIISQNV
PSEEIVEKLFDIGVSDLVSTSNDVKKDGTRVFVDGKLIGFHKDGQNLVDQMREFRRTSKI
HPHVGISIHKPEEEGATQRLYVNCNAGRVLRPLVIIKDGKTLLSNDILEKISKKLISWND
LVRMGVIELLDANEEENCYVTFDDKNTKKFTHMEIFPSAILGAGASIIPYPEHNQSPRNT
YESAMAKQSLGFSTPMMNTSTYVRQHFMLYPQTPIVSTRAMNLLGMEERPAGVNCTVAVL
PFDGYNIEDAIVLNRSSVDRGLFRTFFYRIYDTEAKQYPGGMRDNFEVPNADDNVRGYKG
EKAYRMLEDDGIVATESGVDGGDILIGKTSPPRFMEEYKEFETSGPYRRDTSVGVRPSEH
GVVDTVVMTQSNEGGKMYKIRVRDMRIPEIGDKFASRHGQKGVLGILAKQEDLPYTEQGI
QPDVLINPHAFPSRMTVGMMMESVCGKAAALRGKQFDGSAFVGEKMDIVKEILDKQGFKY
SGKEKMYDGRTGKAFEVDTFIGVVYYQKLHHMVSDKIHARARGQVQMLTKQPTEGRARGG
GLRFGEMERDCLIAYGASMLLKDRLLDESDKTDILLCEKCGLTGYHDARKRKFVCAQCGE
NAPISSVSVAYAFKLLLQEILSLNIAPRLKLKERV
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaattataatcaacgttggcctgtcattcaagacatacttcgaagagaagga
attgcacgacaacatcttacttcttttgatgaatttttagataatggattacaaagtatt
attcaagaagtaggacaaattgaaattgaaaatgcagaatatccttacaaaatccaactt
ggaaaaataaaacttcaacaaccaagaatgatggaattagacggttctattactcatgta
actcctgctgaggcaagactaagaaacatttcatatgttgcaccaatcatgatggaagca
agtgttgttgaagatggtaaaactctagaaactcgttttgttcacattggtgacatgcca
gtaatggtaaagtcacatgcatgtattctaaatacattcactgatcaaaaattaattgat
catcaagaagatcctcgtgaccctggtggatatttcatcattaatggttctgaaagagtt
gtggttggattagaagatctttcttacaataaaattattgttgatgcagaaaaagttgga
ggaaaaatagttcacaaagctaaagtttattcttcaattattggttaccgtgcaaaatta
gaattaattatgaaagatgatggaatgattgttgcaaaaattcctggttctcctgtagac
attccagttgtaactttaatgcgtgcactcggattggaatctgacaaagacattgcaggt
gcagtatcacttgttgatgaaatacaagatcatttggaaggctcatttgaaaaagcaggt
gatgtcccaacttcaaaagacgcaattgtttacatcagtaaaagaattgcaccaggaatg
ttagaagaatttcaaattaaaagagctgaaacacttcttgattggggtttgttacctcac
ttgggcaaacatccagaaaatagaaaagaaaaagctcactttatgggtgaagcagcatgt
aaattattagaactaaagctaggatggattgatccagatgacaaagatcattatggaaac
aaagttatcaagttcgcaggtcaaatgcttgctgatttgtttagaactgcattccgtaat
ttagttagagacatgaagtatcaactagaacgctctggtcaaaaacgtggaataaatgca
gttgctgcagccatacgacctggaattgtttcagataaactaaacaatgcaattgccact
ggaaactggggacgaggacgtgtaggagttacacaattacttgacagaactaattatctc
tcaactatcagtcatttgagacgagtacaatctcctctaagtagaactcaaccaaacttt
gaagcaagagatctacattccacacactttggtagaatctgtccaagtgaaactcctgaa
ggctcaaactgtggtttggtaaagaacttggcattatctgcaattatatctcaaaatgtt
ccatctgaagaaattgtcgagaaattatttgatattggtgtatctgatttagtatctaca
tctaatgatgttaagaaagatggtaccagagtattcgttgatggaaaattaattggattc
cacaaagacggacaaaatctagtagatcaaatgcgtgagtttagaagaacttcaaaaata
catccacatgttggaatatctatacacaagcctgaagaagaaggtgctactcaaagatta
tacgtaaattgtaatgctggtcgtgtactaagaccacttgtaataattaaagacggtaaa
actctactttcaaatgacattcttgagaaaatatccaagaaactaatctcttggaatgat
cttgttcgaatgggagtaattgaattactagatgcaaatgaagaagaaaattgttatgta
acatttgatgataaaaatacaaaaaaattcactcatatggaaattttcccatctgcaatt
cttggtgctggtgcatcaatcattccttatcctgaacataatcaatctccaagaaatact
tacgaatcagccatggcaaaacaaagtcttggattttcaactcctatgatgaatactagt
acttacgttagacaacatttcatgctatacccacaaacaccaattgtttctacacgtgca
atgaatttacttggaatggaagaaagacctgcaggagtaaattgtactgttgcagtatta
ccgtttgatggttataacattgaagatgcaattgtattgaatcgttcatctgtagacaga
ggtttattccgaactttcttttacagaatttatgatactgaagccaaacaatatcctggt
ggaatgagagacaactttgaggttccaaacgcagacgataatgtccgtggttacaaagga
gaaaaagcatacagaatgttagaagatgatggaattgtagcaactgaatctggagttgac
ggtggtgatattttaattggaaaaactagtcctccgagatttatggaagagtataaagaa
tttgaaacaagtggtccatacagacgtgatacatctgttggtgtaagaccttctgaacat
ggtgttgttgatactgttgtaatgactcaatctaatgaaggtggaaaaatgtacaaaatc
cgtgtacgtgatatgagaattccagaaatcggtgataaatttgcatcaagacatgggcaa
aaaggtgtgcttggaattttagcaaaacaagaagatctaccatacactgaacaaggaatt
caacctgatgttttgattaatccacatgcattcccatctagaatgactgttggaatgatg
atggaatctgtttgtggaaaagctgccgcacttagaggaaaacaatttgatggttctgca
tttgttggagaaaaaatggatattgtaaaagaaattcttgataaacaaggtttcaagtat
tctggtaaagaaaaaatgtatgacggtagaaccggtaaagcatttgaagttgatactttc
attggagttgtatattatcaaaaacttcatcatatggtttcagataaaatccatgctaga
gcaagaggtcaagtccagatgcttactaaacaaccaactgaaggtcgtgctcgtggtggt
ggtttaagatttggtgaaatggaacgtgactgtttaattgcatatggtgcatcaatgctt
ctaaaagatagattgttggatgaatctgataaaactgacattttactatgtgaaaaatgt
ggattaaccggttatcatgatgcaagaaaaagaaaatttgtctgtgcacaatgtggtgag
aatgcacctatatcatctgtatccgttgcatatgctttcaaactacttttacaagaaatt
ctaagtcttaacatcgcaccgagattgaaactaaaggagagagtataa
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