Candidatus Nitrosopelagicus brevis: T478_0275
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Entry
T478_0275 CDS
T03537
Name
(GenBank) DNA-directed RNA polymerase subunit A' / DNA-directed RNA polymerase, subunit A'' multi-domain protein
KO
K03041
DNA-directed RNA polymerase subunit A' [EC:
2.7.7.6
]
Organism
nbv
Candidatus Nitrosopelagicus brevis
Pathway
nbv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nbv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
T478_0275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nbv03021
]
T478_0275
Enzymes [BR:
nbv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
T478_0275
Transcription machinery [BR:
nbv03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
T478_0275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_C34
Motif
Other DBs
NCBI-ProteinID:
AJA92825
UniProt:
A0A0A7V829
LinkDB
All DBs
Position
238388..242194
Genome browser
AA seq
1268 aa
AA seq
DB search
MSVTSTKSIEGITFAVWSPQEIRKYSVVEITQPETYDEDGMAVQGGLMDGRLGVLEPGQK
CLTDGNTAARSPGHFGHIELAEPVLHIAFVDNIYKLLQSTCRTCGRIKMSPEDIKEFSKI
KERQASYTVLSQKRIPDQIQEKAKKQKDCPHCGKSQYELIFTKPTTFVEKTEIGENRLLP
ITIRERLSIIPDEDLALLGYDPKTARPEWFVLQALPVPPVTVRPSIILETGIRSEDDLTH
KLVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHVTTYFDNEVSGIPQAHHRSGRPLKT
LTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLDLSEVGVPETVAKKLTIPEIVTDWN
IEKLKKLVINGPSTFPGVNYITRPDGVKIRLDFVEDRSLIADSLEIGFLVERHLMDGDIV
LFNRQPSLHQMSIMAHYVRVLPGKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARSEAI
LLMRVQDQLISPRFGGPIIGGLRDFITGAYLMTKDGTTLSSQEFANLAMLGGFTGQLPEP
ENKKENLYTGKQLFSIFLPEDFNYVMTSKWSKGTKGKEKDVVIKNGQLISGVIDKSSIGA
EEPESVLHRIAKDYGNEKAKIFLNSELIVIKQFITHYGFSYGYGDLEVPEKDREGISSDI
NQTYDEVLDLISQEKKGTLKATRGMTTQETLEAYIVNNLGKLRDRAATAANLSLDDDNAG
KIMATTGARGSSLNVGQMAGALGQQARRGNRLNKGYNNRVLTHFEEHENDPDAHGFVKSN
YRDGLSTLEFFFHAMGGREGLVDTAVRTQQSGYMQRRLINALEHIKLEYDGTVRDPHGHI
IQFLYGEDGIDVAKSDHGEAFNVDRLIESESIVDSGKAATKDEIAPIIKKYTSEFNPRLT
NAVSNSLENSKLSKQGVEKVAKKGLSLYNNAKAEPGQAVGIVTAQSIGEPGTQMTLRTFH
FAGIAERNVTLGLPRLIELVDARKKPVTPTMDIYLSGDAKTDQAKTVEVARNILQTTVND
LILDADTDYKTKITLNLNERKLTDRGCTLDDVKAALESNKKFKMEDNGINSVVLNLVDEE
ADAPAVIVVRNKVLKTTVKGVPDIARVTIVKKNDEYVIQTTGSNLSKVLEVEGIDKNNVR
TNNVSEIAETLGIEAARNALINELSNTLEDQGLEVDQRYLMLVSDLMCHRGYMQQIGRHG
IAGTKDSVLARAAFEITVPTIAGAARTGETEQLRGITENVIVGSQIPIGSGTVDLYMQVA
KKRGSDKS
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttacatctacaaaatcaattgaaggaataacatttgcagtctggtctcctcag
gaaattagaaaatattctgttgttgaaattacacagcctgaaacatatgacgaagatggt
atggctgtacaaggaggtctaatggatggtagattaggagttttagaacctggacaaaaa
tgtcttactgacggtaatactgctgctagaagccctggacatttcggtcacattgaatta
gcagagcctgttttacacattgcatttgttgacaatatctacaaattactacaatcaaca
tgtcgtacttgtggaagaatcaagatgtctcctgaagatatcaaagaattttctaaaatt
aaagaacgtcaagcatcatacactgttttgtctcaaaaaagaattccagatcaaattcaa
gaaaaggctaaaaaacaaaaggattgtcctcactgtggaaaatctcaatacgaattaatt
ttcacaaaaccaacaacatttgtagaaaaaacagagattggtgaaaacagattactacct
attacaattagagaaagattatcaataattcctgatgaagatcttgcattattgggatat
gatcctaagactgcacgtccagaatggtttgttttacaagcattacctgtacctcctgta
actgttagaccttcaattattctagaaactggaattcgctctgaagatgatcttactcac
aaattagttgacattattcgtgttaatcaaagactaaaggaaagtaaagaagctggaact
cctccactaattgtacaggacttggttgatcttttacaatatcacgttacaacctatttt
gataatgaagttagtggaattccacaagcccatcatcgttctggacgtccactcaaaaca
ttaactcaaagattaaaaggaaaagaaggacgatttagaggttcattatctggaaaacgt
gttgacttttcaagtagaactgttatctctccagatccaaacttagatttatctgaagtt
ggcgttcctgaaactgtagccaaaaaattaaccattcctgaaattgtaactgattggaat
attgaaaaattaaaaaaattggtaatcaacggtccatctactttccctggtgtgaattac
attacacgtcctgatggtgtaaaaattagacttgactttgttgaagaccgttcattaatt
gctgattccctagaaattggattcttggttgaaagacatctaatggatggtgatattgta
ttgttcaacagacaaccatcacttcaccaaatgtctatcatggcacattatgttagagta
ttacctggaaaaactttcagactacatccatctgtttgtcctccttacaatgctgacttt
gatggtgatgaaatgaatcttcatgttccacaaagtgaagaagcacgttctgaagcaatt
ttactaatgagagttcaagatcaattaatttctccaagatttggaggtccaattattggt
ggtcttcgtgactttatcactggtgcatacctcatgacaaaagacggaacaactctatct
agtcaagagtttgcaaatcttgcaatgcttggaggatttacaggacaactaccagaacct
gaaaacaagaaagaaaatctctatactggaaaacaattattctcaatattccttcctgaa
gatttcaattatgtaatgacatcaaagtggtctaaaggtactaaaggaaaagaaaaagat
gttgtaatcaaaaatggccaactaatcagtggtgtaattgataaatcatcaattggtgct
gaagaaccagaaagtgtactacatagaattgcaaaagattatggtaatgaaaaagcaaaa
attttcttaaactctgaattaattgttatcaaacaattcatcactcattatggatttagt
tatggatatggtgacttggaagttcctgaaaaagatcgtgaaggaatcagttctgacata
aatcaaacatatgatgaagttttagatttgattagtcaagaaaagaaaggaacactaaag
gcaacaagaggaatgactactcaagaaactcttgaagcatacattgtaaataatttgggt
aaactaagggacagagctgccactgctgcaaatctctcacttgatgatgataatgcgggt
aaaattatggcaactactggcgctagaggttcatcattaaacgtaggacaaatggctggc
gccttgggtcaacaagcaagaagaggtaaccgtcttaacaaaggctacaataatcgagtt
ttaactcatttcgaagagcatgaaaatgatcctgacgctcatggatttgtaaaatcaaat
tatcgtgatggtttatcgactctagaatttttcttccacgctatgggtggtagagaaggt
cttgtagatactgctgtaagaacacagcaaagtggatacatgcaaagaagactgatcaat
gctttagaacatattaaacttgaatatgacggaaccgttagagatccacacggtcacatc
attcaattcttgtatggtgaagatggaattgatgtagcaaaaagtgatcatggtgaagca
tttaacgttgatagattaattgaatctgaaagtattgttgattctggaaaagccgcaaca
aaggacgaaattgcaccaattatcaaaaaatacactagtgaatttaatcctcgtttaaca
aacgctgtaagtaattcattagaaaattcaaaattaagtaaacaaggtgttgagaaagta
gctaagaaaggattatctttatacaataacgcaaaggcagaacctggtcaagctgtagga
attgtaactgctcagtctattggtgaacctggaactcagatgactttgagaacattccac
tttgcaggaattgcagagagaaacgttaccttaggtcttccaagattaattgaattggta
gatgcaagaaagaaacctgtcactccaacaatggatatttacttgtctggtgatgcaaaa
accgatcaagcaaaaactgtcgaagttgctcgaaatattctacaaaccactgttaatgat
ctaatccttgatgctgatactgattataaaacaaaaatcacactcaacctaaatgaaaga
aaactaactgaccgtggttgtactttagatgatgtcaaagcagcactagaatctaataaa
aaattcaaaatggaagataatggaattaattcagttgttcttaacttagttgatgaggaa
gctgacgctcctgctgtcattgtagtaagaaacaaggtgctaaaaacaaccgtaaagggt
gttcctgacattgcacgtgttacaattgtcaaaaagaatgatgaatatgttattcaaaca
accggttctaatctttctaaagtattggaagttgaaggaattgataaaaataatgttaga
acaaacaacgtttctgaaattgctgaaacacttggaatagaggctgcaagaaatgctttg
attaatgaattaagtaatacactagaggatcaaggtctggaagttgaccaaagatatcta
atgttggtatctgatttaatgtgtcatcgtggatatatgcaacaaattggacgtcatgga
attgcaggtactaaagacagtgtattggcacgtgctgcatttgaaatcaccgtgccaaca
attgcaggagctgcaagaaccggtgaaactgaacaactaagaggaataacagaaaatgtt
attgttggaagccaaattccaattggtagtggaactgttgatttgtacatgcaagttgca
aagaaacgtggttctgacaaatcctaa
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