Candidatus Nitrosopelagicus brevis: T478_0404
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Entry
T478_0404 CDS
T03537
Name
(GenBank) KH domain protein
KO
K03679
exosome complex component RRP4
Organism
nbv
Candidatus Nitrosopelagicus brevis
Pathway
nbv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nbv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T478_0404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nbv03019
]
T478_0404
Messenger RNA biogenesis [BR:
nbv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
T478_0404
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
T478_0404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_1
RRP40_S1
KH_6
RRP4_S1
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
AJA92288
UniProt:
A0A0A7V085
LinkDB
All DBs
Position
333090..333770
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AA seq
226 aa
AA seq
DB search
MSNERKRHVIPGEVITSGPYRAEQNTIQVGDKIVSTIVGLSDVHDGSVRVIPLTGGYIPK
DDDLVIGKIASHSSLSWTADINSCYVGMLPASDVFGRDYSSSSDDMNSKLAKGDLIAARI
VNADMTRDPLITISGRELGKIDSGELVKISPNKVPRLIGKRGSMIQLIESSTNSQVTIGQ
NGLLVVSSEDSNGLLKAIQAIELIEEQAHVANLTDQVNEMLESKSE
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacgaaagaaaacgtcatgtaattcctggtgaagtaatcacatctggtccttac
agagctgaacaaaacaccattcaggtcggagataaaatcgtatcaactattgttggttta
tctgatgtacatgatggaagtgttagagtaattccacttactggtggttacattccaaaa
gatgatgatttagtaattggaaaaatcgcatctcattcctcgttatcttggactgcagac
attaattcttgttatgttggaatgcttccagctagtgatgttttcggtagagattattct
tcaagttctgatgatatgaattctaaattagcaaaaggtgatttaattgctgcaagaatt
gtcaatgctgatatgactcgtgatccacttatcacaattagtggtcgtgaacttggtaaa
attgactcaggtgagttagtaaaaatttctccaaataaagttcctagattaattggcaaa
cgaggctcaatgatacaattgattgagtcatcaactaacagtcaagttactattggtcaa
aatggattacttgttgtctcatctgaagattcaaatggattattaaaggcgatacaagca
attgaattgatcgaagaacaagcacacgttgcaaatttaactgatcaagtaaatgaaatg
ttggaatcaaaaagtgaataa
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