Candidatus Nitrosopelagicus brevis: T478_0405
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Entry
T478_0405 CDS
T03537
Name
(GenBank) exosome complex exonuclease 1
KO
K11600
exosome complex component RRP41
Organism
nbv
Candidatus Nitrosopelagicus brevis
Pathway
nbv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nbv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T478_0405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nbv03019
]
T478_0405
Messenger RNA biogenesis [BR:
nbv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
T478_0405
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
T478_0405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
UPA_SH3BP4
Motif
Other DBs
NCBI-ProteinID:
AJA92008
UniProt:
A0A0A7UZF8
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All DBs
Position
333773..334510
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AA seq
245 aa
AA seq
DB search
MGGRDTDIVLLDENGIRCDGRKVNETRKVTIKAGVLKNANGSAYIEFGDNKILVGVYGPR
DVHPKHMSDTDTGILRCRYHMAPFSVGERKNPAPSRREVEISKVIKEALEPAVMLKEFPR
TAVDVFMEVLQADGGTRCAALTGASVALADAGIPMRDLVAGCAAGKAADAVILDVNNEED
QAGQADLPIGYMPNLKKITLLQLDGVLTPEEYKQCIEIGIDGCNQVYEIQKKALQDKFFA
SGEKQ
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atgggtggaagagacacagatattgtattattagatgaaaacggaattcgttgtgacgga
agaaaagtcaacgaaacccgaaaagttaccattaaagctggagttttaaaaaatgctaat
ggttcagcatacattgaatttggtgataacaaaattcttgtgggcgtgtatggtcctaga
gatgtacatccaaaacacatgtctgatactgacacgggaattttacgttgcagataccac
atggctccattttctgttggtgaaagaaaaaatcctgcaccatcaagaagagaagttgaa
attagtaaagtcatcaaagaagcattggaacctgcagtaatgttaaaagaatttcctaga
actgcagttgatgttttcatggaagtcttacaagcagatggtggtacaagatgtgctgca
ttaactggtgcatctgttgcattagctgatgctggaattcctatgcgtgatttagttgct
ggatgtgcagcaggaaaagctgctgatgcagtaatattggatgtaaacaatgaagaagac
caagcaggtcaagcagatcttccaattggttatatgccaaatttgaaaaagattacatta
ttacaattagatggcgttttgactcctgaagagtataaacaatgtattgaaattggaatt
gatggctgtaatcaggtttatgaaatacagaaaaaagctttacaagacaaattctttgca
agtggtgaaaaacaatga
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