Candidatus Nitrosopelagicus brevis: T478_0428
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Entry
T478_0428 CDS
T03537
Symbol
endA
Name
(GenBank) tRNA-intron endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
nbv
Candidatus Nitrosopelagicus brevis
Brite
KEGG Orthology (KO) [BR:
nbv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nbv03016
]
T478_0428 (endA)
Enzymes [BR:
nbv01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
T478_0428 (endA)
Transfer RNA biogenesis [BR:
nbv03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
T478_0428 (endA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Motif
Other DBs
NCBI-ProteinID:
AJA92033
UniProt:
A0A0A7UZJ4
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All DBs
Position
349123..349698
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AA seq
191 aa
AA seq
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MSFDFETKISAKFIDEKTIVLNPKMQNILTERGFGELQNNTLVLDSFETLYLLYNNKLEL
KKVNKNIIFDELIQKYTQKDDDTLTRFLLYRDLRTKGYVVKDGFGFDSDFRVYEKGNYGK
KDAKFLIFAFNEGTQQKIGKLYKNIQEITQMGKEPIIAVIERRGEIIYYKINKMNFLENQ
SELEMKDFNFN
NT seq
576 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattttgaaacaaagatctcagcaaaattcatagatgaaaaaaccattgta
cttaatccaaaaatgcagaatattttgacagaacgagggtttggtgaactacaaaataat
acattggtattagattcatttgaaacattatatctcttgtataacaataaacttgaatta
aaaaaagtaaataaaaatatcatttttgatgaattaattcaaaaatacacccaaaaggat
gatgatactctaactagatttctgctttatagagacttacgaactaaaggttatgttgtg
aaagatggttttggatttgattctgattttagagtatatgaaaaggggaattatggaaaa
aaagatgctaaatttcttatttttgcattcaatgaaggtactcaacaaaaaattggaaaa
ttgtataaaaacattcaagaaattacgcaaatgggtaaggagcctattattgcagtaatt
gaacgtcgtggagaaataatatattataaaatcaataaaatgaatttcttagaaaatcaa
tctgaacttgaaatgaaggattttaattttaattag
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