Candidatus Nitrosopelagicus brevis: T478_0513
Help
Entry
T478_0513 CDS
T03537
Symbol
truD
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
nbv
Candidatus Nitrosopelagicus brevis
Brite
KEGG Orthology (KO) [BR:
nbv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nbv03016
]
T478_0513 (truD)
Enzymes [BR:
nbv01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
T478_0513 (truD)
Transfer RNA biogenesis [BR:
nbv03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
T478_0513 (truD)
Prokaryotic type
T478_0513 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
AJA93002
UniProt:
A0A0A7V1S8
LinkDB
All DBs
Position
421103..422299
Genome browser
AA seq
398 aa
AA seq
DB search
MIPQIDKEIGISVYTTKSPSISGKIKQNENDFLVREILSEKTIDSFNNPDGHGVYLLKKS
GIDTNHALIDIEKRYGLVLKSLGLKDANAKTEQYVFTYKKINSLPEYTGKKYSAQRLGFV
KKPISKKDMLGNYFEIKVSELSNALPSFTGGEKILNFFGYQRFGSKRPITHLVGKSIIKG
DYEEALEYLLNFSSKYDSEKNNEMRKLISERKSETEVIELLPYSMDIERNLLQQLSKDDD
PKNAIRSIPLQLRRFYIQAYQSFLFNKTLSLANEFEENLFEPEIDDVCFDKNSVLGKFEN
IPEQKLAVPLVGHSYYKKSRFDYYIKKILEEELLTPKDFFIKDFQELSVEGGFRNASINY
VDFAIDKDLVKFQLSRGSYATIVLREILKPANPLDCGF
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
gtgattccacaaattgacaaagagataggaatctctgtttacaccacaaaatctccttct
atctcaggtaaaatcaaacaaaatgaaaatgattttttggtacgagaaattttatctgaa
aagaccattgattcatttaacaatccagacggtcatggggtttacttactaaaaaaatct
ggaattgatacgaatcatgcattgattgatattgaaaaacgatatggattggtcttaaaa
tcacttggtttgaaagatgccaatgcaaaaacagaacagtatgtctttacttacaaaaaa
attaattccttgccggaatatactggaaaaaaatattctgcacaaagacttggatttgta
aaaaaaccaatatcaaaaaaagacatgttgggaaattattttgaaattaaagtctcggaa
ctaagtaatgctttaccctcattcactggtggtgaaaaaatccttaacttttttggatat
caaagatttggctcaaaacgaccaataacgcatctagttggaaaatcaatcattaaaggt
gattatgaagaagcactagaatatttactaaacttttcatcaaaatatgattcagaaaaa
aataatgaaatgcggaaattaatatctgaacgaaaatctgaaactgaagtaatagaatta
ttgccatattccatggatattgaaagaaatcttctacaacaactctcgaaggatgatgat
cctaaaaatgcaatacgttcaattccattacaattaagaagattttacattcaagcgtat
cagtcattcctattcaataaaaccttgagccttgcaaatgaatttgaagaaaatctattt
gaacctgaaattgatgatgtttgttttgataaaaactctgtactgggtaaatttgaaaat
attcctgaacaaaaacttgcagttccattagtaggtcattcatattataaaaaatctcga
tttgattattatattaaaaaaattcttgaagaagaattacttacaccaaaagatttcttc
attaaagattttcaagaattgtctgttgaaggaggatttcgtaatgcatcaattaattat
gttgactttgctatagacaaagacttagtaaaatttcaattatctcgtggttcatacgca
actatagttctaagagaaatcctaaaacctgcaaatcctcttgactgtggtttttaa
DBGET
integrated database retrieval system
