Candidatus Nitrosopelagicus brevis: T478_0529
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Entry
T478_0529 CDS
T03537
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nbv
Candidatus Nitrosopelagicus brevis
Pathway
nbv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nbv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T478_0529
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nbv03019
]
T478_0529
03009 Ribosome biogenesis [BR:
nbv03009
]
T478_0529
Enzymes [BR:
nbv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
T478_0529
Messenger RNA biogenesis [BR:
nbv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
T478_0529
Ribosome biogenesis [BR:
nbv03009
]
Prokaryotic type
rRNA helicases
T478_0529
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
AAA_30
Helicase_RecD
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AJA92991
UniProt:
A0A0A7V470
LinkDB
All DBs
Position
complement(431231..432586)
Genome browser
AA seq
451 aa
AA seq
DB search
MKTFEELEINEDIMRSVKELGFTTPFPIQAEAIPVLLRGTDVIGQAHTGTGKTATFGIPM
LQNILHGGGIQGLVIAPTRELAMQITEEIKKVGKYTKIKVVTVYGGQGIGVQLDALRRKP
EIVVATPGRLIDHLDNGSIRTDDIKHVVLDEADVMLDMGFIEDIEYVLQKVPANRITSLF
SATMPPEILRLSDKYLNNPKNILIDSDDLSGEGIDQSFLVIKDREKHKYLTDFINQNRGQ
VIVFCSTKIRTRNVARDLQKSRYKVVAIEGDMSQNKREYSMMKFRKNQADVLVATDVAAR
GIDVPKVGLVVNYDVPNQDMVYFHRIGRTARAGAKGRAITLVSYSSIADWKIIKKQIKSD
LTDLNKKMGIEVHIPDPLKRDVGRRIAQPMRSGYGRRPSYGGRSRPSYGGRSRPSYGGGR
SRDGPARDQYKRRSSARASYGRQGRDSKKKW
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacattcgaagaactagaaataaatgaagacataatgagatccgtcaaagagctc
ggttttaccacaccttttccaattcaagcagaagccataccagtactattacgaggaact
gatgtaataggtcaagcacatactggaacaggaaaaacagctacatttggaataccaatg
ttacaaaatatcttacatggaggaggaattcaaggactagtcattgcacctacaagagaa
ttagcaatgcagattacagaagaaataaagaaagttggaaagtatactaaaatcaaagtg
gtgactgtttacggcggacaaggaatcggagtccaattagatgcactacgtagaaaacca
gagatagtagttgctacacctggaagattaattgatcatttggataatggttcaatccga
acagatgatatcaaacacgtagtattagatgaagcagatgtcatgttagacatgggtttt
attgaagacatagaatatgtcttacaaaaagttcctgcaaatagaattacatctttattt
tcagcaacaatgccaccagaaattctcagactttctgacaagtatctaaataatccaaaa
aatattctaattgattcagatgatttgagtggagaagggattgatcagtcatttttagta
atcaaagacagagagaaacacaagtaccttacagattttattaatcaaaatagaggtcaa
gtaatagtattttgttcaacaaaaattagaacaagaaatgttgcacgagatttacaaaaa
tccagatacaaagtggttgcaattgaaggagacatgtcacaaaataaacgtgaatactct
atgatgaaatttagaaaaaatcaggcagatgtattagtagcaacagatgttgcagcaaga
ggaatagatgttcctaaagtaggattagtagtaaattatgatgttccaaaccaagatatg
gtctatttccatagaattgggcgtacggctagagcaggagctaaaggaagagcaatcact
ttagtgtcatactcatcaattgcagattggaaaatcattaaaaaacaaattaaatcagat
ttaacagatttgaataaaaaaatgggaattgaggttcacatcccagatccactaaaacga
gatgtaggacgacgtattgcacaaccaatgcgttcaggttatggacgtagaccaagttat
ggtggtagaagtagaccaagttatggtggtagaagtagaccaagttatggtggtggtaga
agtagagacggtccagctagagaccaatacaaaagaagaagtagtgcacgagcatcatat
ggaagacaaggtcgcgacagtaagaagaagtggtaa
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