Candidatus Nitrosopelagicus brevis: T478_0583
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Entry
T478_0583 CDS
T03537
Name
(GenBank) putative transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
nbv
Candidatus Nitrosopelagicus brevis
Pathway
nbv03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
nbv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
T478_0583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nbv03021
]
T478_0583
Transcription machinery [BR:
nbv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
T478_0583
Prokaryotic type
Archaeal type
TFB
T478_0583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Trm112p
Ribosomal_S27e
Auto_anti-p27
Zn_ribbon_tTFIIB
HTH_Mga
Lar_restr_allev
RPA_interact_C
RB_B
Sigma70_r4
Zn_ribbon_3
HMG_CoA_synt_C
MCPVI
Motif
Other DBs
NCBI-ProteinID:
AJA92440
UniProt:
A0A0A7V6Y6
LinkDB
All DBs
Position
complement(483969..484871)
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AA seq
300 aa
AA seq
DB search
MNSTNEQRCPSCNKTALITDDNSGEIVCKSCGLVLSEGSEAAGPEWRSFANDGVDKSRTG
TGTSITMHDMGLSTVIGAVNKDATGKPLSSAMKQSFDRIRTWDSRSQAHSSVDKNLRQAL
SEMDKLKDKLSLTDAVIEKAAYIYRKAIEKKLVKGRSIQGLVAACVYAACRDTETPRTLD
NVADGINIRRKDVARCYRLVFRELDLKVPVADPINGIPRIASVAGLGEKTKRKAVEILRK
AKKIGVVAGKDPTGLAAAALYLACITEGGNKTQKEISEASGVTEVTIRNRCAGLKTFLEN
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
ttgaattcgactaacgaacagagatgcccttcttgtaacaaaactgcattgatcactgac
gataactcaggagaaattgtctgtaaatcatgtgggcttgtattatcagaaggaagcgaa
gcagcaggaccagaatggagatcgtttgcaaacgatggagtagacaagagtagaactgga
actggaacatcaattacaatgcacgatatgggtttgtccacagttatcggtgcagtaaac
aaagatgcaacgggtaaaccactttcatctgcaatgaaacagtcatttgatagaattaga
acatgggatagtagatcacaagctcattcttctgttgataaaaatttgagacaagcacta
agtgaaatggacaaattgaaagataaattatcattaactgatgcggttattgaaaaagct
gcatacatttaccgaaaagccattgaaaaaaaattagttaaaggacgttcaatccaagga
cttgttgcagcatgtgtttatgctgcatgtcgagatacagaaacacctagaactttggat
aatgttgcagatgggataaacattagacgaaaagatgtggctcgatgttataggttggtc
tttagagaattagaccttaaagttcctgttgcagatccaattaacggaataccaagaata
gcaagtgtcgcaggattaggtgaaaaaactaaacgaaaagcagttgagattttaagaaaa
gcaaagaaaattggcgtggttgcaggaaaagatcctacaggattagcagctgctgcacta
taccttgcatgtattactgaaggtggaaataaaacacaaaaagaaatttctgaagcatca
ggtgttacagaagtaactattcgtaatagatgtgcaggtctaaagacattcttggaaaat
tag
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