Nocardioides sp. JS614: Noca_0252
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Entry
Noca_0252 CDS
T00443
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
nca
Nocardioides sp. JS614
Pathway
nca03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Noca_0252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nca03400
]
Noca_0252
Enzymes [BR:
nca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Noca_0252
DNA repair and recombination proteins [BR:
nca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Noca_0252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
AAA_30
PDDEXK_1
AAA_22
TetR_C_13
DUF6074
Motif
Other DBs
NCBI-ProteinID:
ABL79797
UniProt:
A1SDB2
LinkDB
All DBs
Position
266872..270207
Genome browser
AA seq
1111 aa
AA seq
DB search
MNAVRPFAITDPLPAGTVLLEASAGTGKTWTIGALLTRYVAEGVARLDQLLVVTFGRAAS
QELRERVRAQLVEAERVLGDDPVAGDSGDPGDPGDPGDSELVTLLRSWGADERRRGHRRV
TEALAGFDAATIATTHQFCSMVLDSLGVAGDTDSRARLVEDLDDLVKETVDDLYLRAFAD
AEPAFTHDEAMAIARAAVGDPQARLEPAGADRSTIAGRKVSFADAVRTELDRRKRRLGIL
SYDDLLSQLADALAQPGSAAAQRMRARWRIVLVDEFQDTDPVQWEVLDRAFSGHATMVLI
GDPKQAIYAFRGGDVTTYLRAAETAQTRQTLAVNRRSDGPLLAAVQTLLAGAELGDERIV
VHDVTAHHGESRLAGAPVPHPFRLRVVRRDTFGRRGGSTLTVGQVRPHVARDLALDVRRL
LASGATWCGEPIRPRDVAVISYRHADLATVREALLEVGVPAVIAGGGSVFATPAAIEWLT
LLEALEQPHRSTRVRSAALTCFFGHTAVELDARGDDLTDEVADTLRGWVELFAGRGLAAV
LEAANVAGLPERVLAEIGGDRRLTDLRHIGEALHEVTLVARHGLPSLLTWLRGQVTEGRA
GRGVERTRRLDSDAAAVQLVTIHASKGLEYPVVYVPALADRFVPKPTRPLFHDDGGTRCL
DVGGARSDDGWADHCRRWADEEAGEWLRLLYVATTRAKSQVVAWWAPTKNAVASPLHRML
MRDGDGPDGEMSASVPAAPAVPDDDAVVTLFSRWRERGGPSPEAAIHADPGADPPRPATP
DLAARTFTRTIDTEWRRASYSSLSRVEVAAPAGAVVSEPEITGKEDEALAPEAVPVAPLL
ASDVPSPMAGLPVGATFGSLVHAVLEHTDPEAVDLRAELLGHIDEQLGWWPVDLDREELA
DALVAVCDSPLGPLAAGTTLRQVTLGDRLREMEFELPLGDGLLGDLRPLLERHLPPGDPV
RAYTAHLDGPLGEQTLRGYLTGSVDVVLRLRSEAGPRYLVVDYKTNWLGPTDEPLTAHSY
ASVALDAAMGHSDYPLQALLYVAVLHRFLRWRQPGYDPEQHLGGVLYLYLRGMCGPDTPS
VDGAPCGVFAWRPPVALVEELSDLLDGGARD
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgctgtgcgccccttcgccatcaccgacccgctgccggccggcaccgtgctgctc
gaggcgagcgccggcaccggcaagacctggaccatcggcgccctcctcacgcggtacgtc
gccgaaggagtcgcccggctcgaccagctgctcgtcgtgacgttcggccgcgcggccagc
caggaactgcgcgagcgggtgcgcgcgcagctggtcgaggccgagcgggtgctgggcgac
gacccggtggccggcgactccggtgaccccggtgaccccggtgaccccggtgactccgaa
ctcgtgacgctgctgcgctcgtggggcgccgacgagcggcgccgcggccaccgccgggtc
accgaggcgctcgccggcttcgacgcggcaaccatcgcgaccacccaccagttctgctcg
atggtgctcgactccctcggcgtcgcaggcgacaccgactcccgggcgcggctggtcgag
gacctcgacgacctggtcaaggagaccgtcgacgacctctacctccgcgcgttcgccgac
gccgagccggcgttcacccacgacgaggcgatggccatcgcccgggcggcggtcggcgac
ccgcaggcccgcctcgaacccgccggcgcggaccgctcgacgatcgcgggccgcaaggtg
agcttcgccgacgccgtacgcaccgagctcgaccgccgcaagcgccggctcggcatcctc
tcctacgacgacctgctctcccagctcgccgacgcgctcgcccagccggggagcgccgcg
gcccagcggatgcgggcgcgctggcggatcgtgctggtcgacgagttccaagacaccgac
ccggtgcagtgggaggtcctcgaccgggccttcagcggccacgccacgatggtcctgatc
ggcgatccgaagcaggcgatctacgcgttccgcgggggcgacgtcaccacctacctgcgg
gccgccgagaccgcgcagacccggcagacgctcgcggtcaaccgacgcagcgacggcccg
ctgctcgccgccgtccagacgctcctcgccggcgcggagctcggcgacgagcggatcgtc
gtgcacgacgtgaccgcgcaccacggcgagtcccgcctcgccggtgctccggtcccgcat
ccgttccggctgcgggtggtgcgccgcgacacgttcgggcgccgtgggggcagcacgctc
acggtcggtcaggtccgcccgcatgtcgcgagagacctggcgctcgacgtacgccggctg
ctcgcgtcgggcgcgacctggtgcggggagccgatccggccgcgggacgtcgcggtgatc
agctaccgccacgccgacctcgccaccgtccgcgaggcgctgctcgaggtcggggtgccg
gcggtgatcgccggcggcggcagcgtgttcgcgacccccgcggcgatcgagtggctcacg
ctgctggaggcgctcgagcagccgcaccgcagcacccgcgtgcgctcggccgcgctgacc
tgcttcttcgggcacaccgccgtcgagctcgacgcccgcggggacgacctgaccgacgag
gtcgccgacacgctgcgcggctgggtcgagctcttcgccggccgcggcctcgccgcggtg
ctcgaggccgcgaacgtcgcgggcctgccggagcgggtgctcgcggagatcggcggggac
cggcggctgaccgacctgcgccacatcggcgaggcgctgcacgaggtcaccctcgtcgcg
cggcacgggctgccctcgctgctcacctggctgcgggggcaggtcaccgagggccgcgcg
ggccgcggcgtcgaacggacccgccggctcgactccgacgcggccgccgtccagctcgtc
accatccacgccagcaaggggttggagtaccccgtcgtctacgttcccgccctcgccgac
cgcttcgtcccgaagccgacccgaccgctgttccacgacgacggcggcacgcgctgcctc
gacgtcggcggcgcgcgctcggacgacggctgggccgaccactgccggcgctgggccgac
gaggaagcgggcgagtggctgcggctgctctacgtcgcgaccacccgggccaagtcgcag
gtggtcgcctggtgggcgccgaccaagaacgccgtcgcctcgccgctgcaccggatgctg
atgcgcgacggcgacgggcctgacggtgagatgtcggcgagcgtgcccgccgcgccggcc
gtgccggacgacgacgccgtggtcacgctgttctcgcggtggcgcgaacgtggcgggccg
agccccgaagccgcgatccacgccgacccgggcgcggacccgccacggccggcgaccccc
gacctcgcggcgcggacgttcacccgcaccatcgacaccgagtggcggcgcgcgtcgtac
tcctccctcagcagggtggaggtggccgcgccggccggcgcggtggtgagcgagccggag
atcaccggcaaggaggacgaagcgctcgctcccgaggccgtccccgtggcgccgctgctc
gccagcgacgtgccgtcgccgatggcggggctgccggtgggcgcgaccttcgggtcgctc
gtgcacgcggtgctggagcacaccgacccggaggctgtcgacctgcgtgccgagctgctc
ggccacatcgacgagcagctcggctggtggccggtcgatctcgaccgtgaggagctggcc
gacgcgctggtggcggtctgcgactccccgctgggcccgctcgccgccggcaccacgctg
cggcaggtcactctcggcgaccggctgcgcgagatggagttcgagctcccgctcggcgac
ggcctgctcggcgacctccgcccgctgctggagcggcacctgccgcccggtgacccggtc
cgcgcgtacaccgcccatctcgacggcccgctcggcgagcagaccctgcgcggctacctc
accggctccgtcgacgtcgtgctccggctgcgctcggaggcggggccgcgctacctggtc
gtcgactacaagaccaactggctcggacccaccgacgagccgctcaccgcgcacagctac
gcgtcggtcgcgctcgacgccgcgatgggccactccgactaccccctgcaggcgctgctg
tacgtcgccgtcctgcaccggttcctccgctggcgccagcccgggtacgaccccgagcag
cacctcggcggcgtcctctacctctacctgcgcggcatgtgcgggccggacacgccatcg
gtcgacggcgcgccctgcggtgtgttcgcgtggcggccaccggtcgccctggtcgaggag
ctctccgacctgctggacggcggtgcccgtgactga
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