Nocardioides sp. JS614: Noca_0332
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Entry
Noca_0332 CDS
T00443
Name
(GenBank) RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG
KO
K02405
RNA polymerase sigma factor FliA
Organism
nca
Nocardioides sp. JS614
Pathway
nca02020
Two-component system
nca02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nca00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Noca_0332
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Noca_0332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nca03021
]
Noca_0332
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
nca02035
]
Noca_0332
Transcription machinery [BR:
nca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Noca_0332
Bacterial motility proteins [BR:
nca02035
]
Flagellar system
Flagellar assembly proteins
Stator
Noca_0332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
KORA
HTH_3
NirdL-like_HTH
DUF3618
HTH_Tnp_1
HTH_AsnC-type
Motif
Other DBs
NCBI-ProteinID:
ABL79876
LinkDB
All DBs
Position
complement(355713..356549)
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AA seq
278 aa
AA seq
DB search
MTIAERDQLAVQHVPLVAHLVRETMARVPSYMDRNDLHSAGLLALVQAARAFDPERGVPF
AGYASTRIRGALVDELRSVDWASRSVRRRAREIEAARARLAATLGQFPDDAAVAEALGIT
PEEIGKADSEVARAVVLPLDAGPNAGFVESLAGRDPGPEEEALHAERAQYLAAAIEELPE
RLRHVVRGYFVAQRPMAELAAELGVSESRISQLRAEALVLLRDALAEAFEPHLAAPHPNP
DGVAARRRLAYTSAVAARYAARRTMPAARVREGLSSIA
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgacaatcgcggagcgcgaccagctcgccgtccagcacgtgccgctggtggcgcacctg
gtgcgcgagaccatggcgcgggtgccgtcgtacatggaccgcaacgacctgcactccgca
ggcctcctcgcgctcgtccaggccgcccgcgccttcgaccccgagcgcggggtgccgttc
gccggctacgcctccactcggatccgcggcgcgctggtcgacgagctgcgctcggtggac
tgggcctcgcgctcggtgcgccgccgtgcccgggagatcgaggcggcacgggcccgcctg
gccgcgaccttgggtcagttccccgacgacgccgcggtcgccgaggccctggggatcacc
ccggaggagatcggcaaggccgactccgaggtggcccgggccgtggtgctgccgctcgac
gcgggcccgaacgcggggttcgtcgagagcctggccggtcgcgaccccggccccgaggag
gaggcgctgcacgccgagcgcgcgcagtacctcgcggccgcgatcgaggagcttcccgag
cggctgcgccacgtggtgcgcggctacttcgtcgcgcagcggccgatggccgagctggcc
gccgagctcggggtcagcgagtctcggatctcgcagctgcgcgccgaagcactggtgctc
ctgcgcgacgccctcgccgaggccttcgagccgcacctggccgcgccgcacccgaacccc
gacggtgtcgcggctcggcgccggctcgcctacaccagcgccgtcgccgcccggtacgcc
gcccgccggacgatgcccgccgcccgcgtccgcgaggggctcagctcgatcgcctag
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