Nocardioides sp. JS614: Noca_0334
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Entry
Noca_0334 CDS
T00443
Name
(GenBank) RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG
KO
K02405
RNA polymerase sigma factor FliA
Organism
nca
Nocardioides sp. JS614
Pathway
nca02020
Two-component system
nca02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nca00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Noca_0334
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Noca_0334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nca03021
]
Noca_0334
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
nca02035
]
Noca_0334
Transcription machinery [BR:
nca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Noca_0334
Bacterial motility proteins [BR:
nca02035
]
Flagellar system
Flagellar assembly proteins
Stator
Noca_0334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
KORA
NirdL-like_HTH
TPR_19
DUF3618
Motif
Other DBs
NCBI-ProteinID:
ABL79878
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All DBs
Position
357823..358725
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AA seq
300 aa
AA seq
DB search
MTDPEVNEPDTPTAATSGPGPRPGSAEADRLAVEHVPLVTHVVYETLARVPSYVDRNDLR
SAGLLALVAAARSFDPERGVPFARYAMPRIRGAMVDELRSVDWASRSVRRRAREIEEARA
RLAATLGEFPDDEAVAAALGMTLDEVNRVDSEAARGTVLPLDAGAQQGLAEILPVREAGP
EERAVHLERVRYLADAVEELPERMRLVVRGYFLEERPMAELAAELGVTESRVSQVRAEAL
ALLRDALGEAFDPHLPKPHPNPAGVAARRRLAYTSAVAARYAARRTMPARRPHRGLESTA
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatccggaggtcaacgagcccgacacgcccaccgcggccaccagcgggcccggc
ccgcgacccggatccgccgaggcggaccggctggccgtggagcacgtaccgctggtgacg
cacgtggtgtacgagacactcgcgcgagtgccgtcgtacgtcgaccgcaacgacctgcgc
tcggccggcctcctggccctggtggccgccgcgcggtccttcgaccccgagcgcggggtc
ccgttcgcccgttatgccatgccgcggatccggggcgcgatggtcgacgagctgcgctcg
gtggactgggcctcgcgctcggtgcgccgccgggcccgggagatcgaggaggcgcgggcc
cgcctggccgcgacgctcggcgagttccccgacgacgaggcggtcgcggccgcgctcggg
atgaccctcgacgaggtcaaccgggtcgactcggaggctgcccgggggaccgtcctgccc
ctcgacgccggcgcccagcaggggctggccgagatcctgccggtccgcgaggcgggcccg
gaggagcgggccgtgcacctcgagcgggtgcgctacctcgccgacgccgtcgaggagctc
ccggagcggatgcgcctcgtggtgcgcggctacttcctcgaggagcgcccgatggccgag
ctggccgccgagctcggcgtcaccgagtcgcgggtctcgcaggtccgcgccgaggcgctc
gcgctgctgcgcgacgcactgggtgaggccttcgacccgcacctgcccaagccccacccc
aatcctgcgggcgtggccgcccggcgccggctcgcctacaccagcgccgtcgcggcgcgg
tacgccgcccgtcgcacgatgccggcccgccgcccgcaccgcgggctcgagtccaccgcc
tga
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