Nocardioides sp. JS614: Noca_0408
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Entry
Noca_0408 CDS
T00443
Name
(GenBank) Thrombospondin type 3 repeat
Organism
nca
Nocardioides sp. JS614
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Gene cluster
GFIT
Motif
Pfam:
TSP_3
Dockerin_1
Motif
Other DBs
NCBI-ProteinID:
ABL79951
UniProt:
A1SDR6
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Position
complement(439817..442225)
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AA seq
802 aa
AA seq
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MDRKSSLVLLLLLALALVGMGAPAASSPSSEFVRPSWGDGQLPAGCVVDRDPLNPDNLCY
HMKVGLNALDSPKVDVDVLVPVSPAAERDMRVAEQAVMMWEGGLHHLADQMDLPWLKDGF
DMNVRTHQVVVDPTGALQQPLALVDPEIVVIVSNPAGGVGIGIDPVSFAGELGIIDGEGA
PCAAVPSPLDFGTWTDKPGFEQHGREKGGVYVEDCGGVGGNVCFAVNGAVDPVPGASDFF
GLFDLVAHEFGHCLTLGHVGDGADGPWGPTPTNDIMAYSTDPPGVAKCVSTLDVEGFALR
MSRYLDVNGDGAVDRHDHLAPNDVRGDGFNSFQVQHPDDHLYASSTGDPADCPQPELGPV
PLSYGSWSPKPVATTRPVLRTSSLQVTNGHVHVRGDATNEPLGKTPTQRSARATDATSDS
PTPVTDLTGVQVSVTRRTVDATMSVTQVWPVAQGGSATAYSLLVSGRRFDSFICTGDTSG
TPQVMDNGTGYYLPGGSATWNYDDNTVTFHIRRDYLADQQIEAPYTVNAITGLHARGNDW
IATTDAAPDGAGLRLAAPPMGAETRDAPVARTVRTARVELTPEGGASVLPTDSTLGVGLV
SAVDSRDYFDLPIAKQATAEVTLSWTGSTIFGLSVNGGSGQQVAEQDGRITVTVPWARRD
LSITVDPQEVVEPTTYTLTARLTTVRADHDRDRVPDVADRCPTRPGPSASSGCPDTDADG
ILDRDDRCPTEASASASGCPTDGDERVVLIVDGRRLAAQTVVTAHGSAAFTLDGVVGRGT
HRVVLAWIRDGKVVARISRRAG
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcaagagctccctcgtccttctcctgctgctcgccctcgccctggtggggatg
ggcgcgccggcggccagcagcccgtcgagcgagttcgtccgtccgagctggggtgacggt
cagctgcccgcaggctgcgtggtcgaccgcgacccgctcaaccccgacaacctctgctac
cacatgaaggtgggcctgaacgccctcgactccccgaaggtcgatgtcgacgtgctggtg
ccggtctcccccgcggccgagcgtgacatgcgggtcgccgagcaggccgtgatgatgtgg
gaaggcggcctgcaccatctcgccgaccagatggacctgccctggctgaaggacgggttc
gacatgaacgtccgcacccaccaggtcgtggtcgaccccaccggagcgctgcagcagccc
ctcgccctggtcgatcccgagatcgtcgtgatcgtcagcaacccggccggcggggtcggc
atcgggatcgacccggtgtcgttcgccggcgagctcgggatcattgacggcgagggcgct
ccgtgcgccgccgtgccctccccgctggacttcggcacgtggacggacaagccggggttc
gagcagcacggccgcgagaagggcggtgtgtacgtcgaggactgcggcggcgtcggcggc
aacgtctgcttcgccgtcaacggcgcggtggacccggtgcccggcgcgtccgacttcttc
ggcctcttcgacctggtggcccacgagttcggccactgcctcaccctgggccacgtgggc
gacggcgccgacggcccctggggcccgacgccgaccaacgacatcatggcctacagcacc
gacccgccgggcgtcgccaagtgcgtctccaccctcgacgtcgagggcttcgcgctgcgg
atgagccggtacctcgacgtcaacggagacggggcggtggaccggcacgaccacctcgcc
cccaacgacgtccggggcgacgggttcaactcgttccaggtgcagcaccccgacgaccac
ctctacgcctcctcgaccggggaccctgcggactgcccgcagcccgagctcggtcccgtc
ccgctcagctacggcagctggagcccgaagcccgtcgccacgacacgtccggtgctgcgg
acctcctccctgcaggtcaccaacggccacgtgcacgtgcgcggtgacgccaccaacgag
cccctcggcaagacgccgacccagcgcagcgcgcgggcgaccgacgccacgtccgactcg
cccaccccggtcacggacctgaccggcgtccaggtgtcggtgacgcgcaggacggtggac
gcgacgatgtcggtcacccaggtgtggccggtcgctcagggcgggtcggccacggcgtac
agcctgctcgtctcggggcgccgcttcgactccttcatctgcaccggggacacgtccggc
accccgcaggtgatggacaacggcaccggctactacctgcccgggggcagcgcgacctgg
aactacgacgacaacaccgtcaccttccacatccgccgcgactacctggccgaccagcag
atcgaggcgccgtacacggtcaacgccatcaccggcctgcacgcgcgcggcaacgactgg
atcgcgaccacggacgccgctccggacggcgccgggctgcgcctggccgcgccgccgatg
ggcgccgagacccgcgacgcgccggtcgcccggacggtgcggaccgcacgggtcgagctg
accccggagggcggcgccagcgtcctgcccaccgacagcacgctcggcgtcggcctggtc
agcgccgtcgacagccgcgactacttcgacctgccgatcgcgaaacaggcgaccgccgag
gtcaccctgagctggaccggctccacgatcttcggcctctccgtcaacggcggctcgggg
cagcaggtggcggagcaggacggccgcatcaccgtcaccgtcccgtgggcccgccgggac
ctgtcgatcaccgtcgacccgcaggaggtcgtcgagccgacgacctacacgctgaccgcc
cgactgaccacggtgcgggccgaccacgaccgcgaccgggtgccggacgtcgccgaccgg
tgcccgacccggcccgggcccagcgccagcagcggctgccccgacaccgacgccgacggc
atcctcgaccgggacgaccggtgcccgaccgaggcctcggcgagcgcgtccgggtgcccg
acggacggcgacgaacgggtcgtcctgatcgtcgacgggaggcggctggccgcacagacg
gtggtcaccgcccacggcagcgcggccttcaccctcgacggcgtggtcggccgaggcacg
caccgcgtggtgctcgcctggatccgtgacggcaaggtcgtcgcgcggatcagccggcgg
gccgggtag
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