Nocardioides sp. JS614: Noca_0711
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Entry
Noca_0711 CDS
T00443
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nca
Nocardioides sp. JS614
Pathway
nca03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nca00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Noca_0711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nca03021
]
Noca_0711
03400 DNA repair and recombination proteins [BR:
nca03400
]
Noca_0711
Enzymes [BR:
nca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Noca_0711
Transcription machinery [BR:
nca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Noca_0711
DNA repair and recombination proteins [BR:
nca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Noca_0711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
FH2
Motif
Other DBs
NCBI-ProteinID:
ABL80236
UniProt:
A1SEK1
LinkDB
All DBs
Position
749765..753265
Genome browser
AA seq
1166 aa
AA seq
DB search
MQIEERIVEGHLLAARTTPGNTRRISFAKITEPLEVPQLLSLQTDSFDWLVGNDKWNAAV
ERRRSEGEDVSSKSGLQEIFEEISPIEDFSETMSLSFENPVFYDPKYTVDECKEKDFTYS
APLYVSAEFTNNDTGEIKGQTVFMGDFPLMTDKGTFIINGTERVVVSQLVRSPGVYFERT
ADKTSDKDIYTAKLIPSRGAWLEFEIDKRDMVGVRLDRKRKQNVTVLLKALGWTNEQIRE
EFGEYESMMLTLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLNNYYFNPKRYDLAK
VGRYKINKKLGLLEAFDQQTLTIDDVVAAIKYIVALHDGREQIEAPQGTLDISADDIDHF
GNRRMRTVGELIQNQLRTGLARMERVVRERMTTQDVEAITPQSLINIRPVVAALKEFFGT
SQLSQFMDQTNPIAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETPEGPN
IGLIGSLASYGRINPFGFVETPYRKVTKGKVTDQIDYLTADDEDRYVIAQANAALDDKSR
FVEERVLVRQRDGEVSEVLADEVDYMDVSPRQMVSVATALIPFLEHDDANRALMGANMQR
QAVPLIKSDSPLVGTGIEYRAAVDAGDVVVATAAGVVKEVSADVIETMNDDGTYSTYRLA
KFKRSNQGTCINQRPLVSEGDRLEIGTPIADGPCTDEAEMALGTNLLVAFMPWQGHNYED
AIILSQRLVQEDILTSIHIEEHEVDARDTKLGPEEITRDIPNVSEEMLADLDERGIIRIG
AEVTTGDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVPHGESGTVIGVRVF
DREDGDELPPGVNQLVRVYVAQKRKISVGDKLAGRHGNKGVIAKILPIEDMPFMEDGTPV
DVVLNPLGVPRRMNIGQILELHLGWLAKQGWDLNLNDDKSGADWKQRLIKIHADKAEPGT
KVATPVFDGAREDEITGLLGSTIPNRDGVRMIDNTGKASLFDGRSGEPFPEPVAVGYMYI
LKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMEAYGAAYALQELLT
IKSDDVPGRVKVYEAIVKGENIPDSGIPESFKVLVKEMQSLCLNVEVLSQDGTAIEMRDA
EEDVFRAAEELGIDLSRREPSSVEEV
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcgaagagcgaatcgtcgaaggacacctcttggccgcgcgcaccacccccggt
aacacccgccgcatctctttcgcaaagatcaccgaacctctcgaggtcccgcagctcctc
tccctccagaccgacagcttcgactggctggtcggcaacgacaagtggaacgccgccgtc
gagcgccgccgttccgagggtgaggacgtctccagcaagtccggtctccaggagatcttc
gaggagatctccccgatcgaggacttctccgagacgatgtcgctgtcgttcgagaacccg
gtcttctacgaccccaagtacaccgtcgacgagtgcaaggagaaggacttcacctactcc
gcgccgctctacgtctcggcggagttcaccaacaacgacaccggtgagatcaagggccag
acggtcttcatgggcgacttccccctgatgaccgacaagggcaccttcatcatcaacggc
accgagcgggtcgtcgtctcgcagctcgtccgctcgccgggcgtctacttcgagcgcacc
gccgacaagacgtccgacaaggacatctacaccgccaagctgatcccgtcgcggggcgcc
tggctcgagttcgagatcgacaagcgcgacatggtcggcgtccgcctcgaccgcaagcgc
aagcagaacgtcacggtgctgctcaaggccctcggctggacgaacgagcagatccgcgag
gagttcggcgagtacgagtcgatgatgctgaccctggagaaggaccacacccagggccag
gacgacgcgctgctcgacatctaccgcaagctgcgcccgggcgagccgccgacgcgggag
gccgcgcagacgctgctgaacaactactacttcaacccgaagcgctacgacctcgccaag
gtcggccgctacaagatcaacaagaagctcggcctcctcgaggcgttcgaccagcagacg
ctgacgatcgacgacgtggtcgccgcgatcaagtacatcgtcgcgctgcacgacggccgc
gagcagatcgaggcgccgcagggcaccctcgacatctcggccgacgacatcgaccacttc
ggcaaccgccggatgcgcacggtcggcgagctgatccagaaccagctccgcaccggcctg
gcccgcatggagcgcgtggtccgcgagcggatgacgacccaggacgtcgaggcgatcacg
ccgcagtccctgatcaacatccgtccggtggtggcggcgctgaaggagttcttcggcacc
tcccagctctcgcagttcatggaccagaccaacccgatcgccggcctgacgcacaagcgc
cggctctcggcgctcggtcccggtggtctgtcccgcgaccgcgccggcatggaggtccgt
gacgtccacccgtcgcactacggccggatgtgcccgatcgagacgccggaaggcccgaac
atcggcctgatcggctcgctcgcctcgtacggccggatcaacccgttcgggttcgtcgag
acgccgtaccgcaaggtcacgaagggcaaggtcaccgaccagatcgactacctcaccgcc
gacgacgaggaccgctacgtcatcgcgcaggcgaacgccgcgctcgacgacaagagccgc
ttcgtcgaggagcgtgtgctggtccgccagcgcgacggcgaggtctccgaggtgctcgcc
gacgaggtcgactacatggacgtctcgccgcgccagatggtgtcggtcgcgaccgcgctg
atcccgttcctcgagcacgacgacgccaaccgcgcgctcatgggcgccaacatgcagcgc
caggcggtgccgctcatcaagagcgactcgccgctggtcggcaccggcatcgagtaccgc
gccgcggtcgacgccggcgacgtggtcgtggcgaccgcggcgggcgtggtcaaggaggtg
tccgcggacgtcatcgagacgatgaacgacgacggcacctactcgacgtaccgcctggcc
aagttcaagcgctccaaccagggcacctgcatcaaccagcgtccgctggtcagtgagggc
gaccggctcgagatcggcaccccgatcgcggacggtccctgcaccgacgaggccgagatg
gcgctcggcaccaacctcctcgtggcgttcatgccgtggcagggccacaactacgaggac
gccatcatcttgagccagcgcctggtccaggaggacatcctcacctcgatccacatcgag
gagcacgaggtcgacgcgcgggacaccaagctcggccccgaggagatcacccgggacatc
ccgaacgtctccgaggagatgctcgccgacctcgacgagcgcggcatcatccggatcggc
gcggaggtcaccaccggtgacgtcctcgtcggcaaggtgacccccaagggcgagaccgag
ctgacccccgaggagcgcctgctgcgtgcgatcttcggtgagaaggcgcgcgaggtgcgc
gacacctcgatgaaggtcccgcacggcgagtccgggaccgtcatcggcgtccgggtcttc
gaccgtgaggacggcgacgagctgcccccgggcgtcaaccagctggtccgggtctacgtc
gcccagaagcgcaagatctcggtcggtgacaagctcgcgggccggcacggcaacaagggc
gtcatcgcgaagatcctgccgatcgaggacatgccgttcatggaggacggcacgccggtc
gacgtcgtgctcaacccgctgggtgtgccgcgacggatgaacatcgggcagatcctcgag
ctgcacctgggctggctggccaagcagggttgggacctcaacctgaacgacgacaagtcc
ggtgccgactggaagcagcgcctgatcaagatccacgccgacaaggcggagcccggcacg
aaggtcgccaccccggtcttcgacggtgcccgcgaggacgagatcaccgggctgctcggc
tcgacgatccccaaccgcgacggcgtgcggatgatcgacaacaccggcaaggcgagcctg
ttcgacggccgctcgggcgagccgttcccggagcccgtcgcggtcggctacatgtacatc
ctcaagctgcaccacctcgtggacgacaagatccacgcgcgcagcaccggcccctactcg
atgatcacgcagcagccgctgggcggtaaggcccagttcggtggccagcggttcggcgag
atggaggtctgggccatggaggcgtacggcgccgcctacgccctgcaggagctgctcacg
atcaagtcggacgacgtgcccggtcgcgtcaaggtctacgaggccatcgtgaagggcgag
aacatccccgactccggcatcccggagtcgttcaaggtgctcgtcaaggagatgcagtcg
ctctgcctcaacgtggaggtgctgtcccaggacggcacggctatcgagatgcgcgacgcg
gaggaggacgtcttccgcgccgccgaggagctcggcatcgacctgtcccgtcgcgagccc
agctcggtcgaagaggtgtga
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