Nocardioides sp. JS614: Noca_0712
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Entry
Noca_0712 CDS
T00443
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nca
Nocardioides sp. JS614
Pathway
nca03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nca00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Noca_0712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nca03021
]
Noca_0712
03400 DNA repair and recombination proteins [BR:
nca03400
]
Noca_0712
Enzymes [BR:
nca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Noca_0712
Transcription machinery [BR:
nca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Noca_0712
DNA repair and recombination proteins [BR:
nca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Noca_0712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ABL80237
UniProt:
A1SEK2
LinkDB
All DBs
Position
753385..757257
Genome browser
AA seq
1290 aa
AA seq
DB search
MLDVNFFDQLQIGLATADDIRTWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITAVDEDARHRDLSSLEGKVGLERERLEKRRDQSIDDRAKKLEED
LAALEAEGAKADQRRKVKDGAEREMKQLRDRAQREIDRLDEVWNTFKSLKVQDLMGDEML
YREMKNWFGKYFEGHMGATAIQKRLESFDIEAEVELLRDTIANGKGQRKVRALKRLKVVD
AFRKTGNKPQGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVSGPQLKLHQCGLPKQMALELFKPFVMKRLVDLSHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQIHPLVCSAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSTNNILKPSDGRPVTMPTQDMIIGLFFLTTDRDGQPGDGR
AFASPAEAIMAFDRGEISLQSKVRIRFTDIVPPLELGADWEQGQAVSLETTLGRALFNET
LPADYPYVNYEVGKKALGAIVNDLAERYTKVEVAASLDALKDTGFHWATRSGVTVSIDDV
TTPGDKADILSGYEAQAAKVQKQFERGLVTDEERRQELIEIWTQASNEVGKAMEANFDRA
NPIYMMVDSGASGNMNQIRQVAAMRGLVANPKGEIIPRPIKSNFREGLTVLEYFIATHGA
RKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTERGLPKRIGERREDGTVVKAENA
ETAAYARTSAVDVAHPETGEVLVRAGEDLGDVKIGELISAGVEEVKVRSVLTCDAKTGTC
AKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRVVE
LFEARSPKGRSPISEAAGRVTIEESDKARKVLITPDDGSEVQEYPVSKRSRLLVGDGDHI
EVGQMLTVGTPDPQDVLRILGVRRAQEHLVDEVQAVYRSQGVSIHDKHIEIIVRQMLRRI
TVIESGDTNLLPSDLVDRVRFEEENRRVVSEGGKPASGRPVLMGITKASLATESWLSAAS
FQETTRVLTDAAIHGRSDSLRGLKENVIIGKLIPAGTGLERYRNIRVEPTEEARAAAYSV
TGYDSYDYEFGNGTGQAVALDDFDFGSYQN
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtgaacttcttcgaccagcttcagatcggcctggccaccgcggacgacatc
cgcacttggagccacggtgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagcgtgacggcctcttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgggtccggttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccggtccaaggtccgccgcgagcggatgggccacatcgagctcgccgccccg
gtcacccacatctggtacttcaagggtgtcccgagccgcctgggctacctgctcgacctc
gccccgaaggacctggagaaggtcatctacttcgcggcgtacatgatcacggccgtcgac
gaggacgcccgccaccgcgacctgtcctcgctcgagggcaaggtcggactcgagcgcgag
cgcctcgagaagcgccgcgaccagtccatcgacgaccgtgcgaagaagctggaggaggac
ctggctgccctcgaggccgagggtgccaaggccgaccagcggcgcaaggtcaaggacggc
gccgagcgcgagatgaagcagctgcgcgaccgtgcccagcgggagatcgaccgcctcgac
gaggtgtggaacaccttcaagtcgctgaaggtccaagacctcatgggcgacgagatgctc
taccgcgagatgaagaactggttcggcaagtacttcgagggccacatgggcgccacggcg
atccagaagcgcctggagagcttcgacatcgaggccgaggtcgagctgctgcgcgacacc
atcgccaacggcaagggccagcgcaaggtgcgggccctcaagcggctcaaggtcgtcgac
gcgttccgcaagaccggcaacaagccgcagggcatggtgctcgacgcggtcccggtcatc
ccgccggacctgcggccgatggtccagctcgacggcggccgcttcgcgacctcggacctg
aacgacctgtaccgccgtgtcatcaaccggaacaaccggctcaagcgactgctcgacctg
ggtgctcccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtcgactcg
ctgttcgacaacggtcgccgcggtcgtcccgtcaccggcccgggcaaccggccgctgaag
tcgttgtccgacatgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactccggccgttccgtgatcgtgtccggcccgcagctgaagctgcaccag
tgcggcctgcccaagcagatggcgctcgagctgttcaagccgttcgtgatgaagcgcctg
gtcgacctgtcgcacgcgcagaacatcaagtccgcgaagcggatggtggagcgcgcccgc
ccggtcgtgtgggacgtcctcgaagaggtcatcaccgagcacccggtgctgctcaaccgg
gcacccaccctgcaccgtctcggcatccaggccttcgagccgcagctgatcgagggcaag
gccatccagatccacccgctggtctgctcggcgttcaacgcggacttcgacggtgaccag
atggcggtgcacctgccgctgtccgcggaggcccaggccgaggcccggatcctgatgctg
tcgacgaacaacatcctcaagccgtcggacggccgccccgtgaccatgcccacccaggac
atgatcatcggcctgttcttcctcaccaccgaccgtgacggtcagccgggtgacggccgg
gcgttcgcgtcgccggccgaggcgatcatggcgttcgaccggggtgagatctcgctgcag
agcaaggtcaggatccggttcaccgacatcgtgccgccgctcgagctgggcgccgactgg
gagcagggtcaggccgtctcgctggagaccactctcggccgcgcgctgttcaacgagacc
ctgcccgccgactacccgtacgtgaactacgaggtcggcaagaaggcgctcggcgcgatc
gtcaacgacctggccgagcgctacaccaaggtcgaggtcgcggcctccctcgacgcgctg
aaggacaccggcttccactgggcgacccgctccggcgtcacggtctcgatcgacgacgtg
acgaccccgggtgacaaggccgacatcctgtcggggtacgaggcccaggccgccaaggtc
cagaagcagttcgagcgcggcctggtcaccgacgaggagcgccgccaggagctcatcgag
atctggacccaggcctccaacgaggtcggcaaggcgatggaggcgaacttcgaccgcgcc
aacccgatctacatgatggtcgactcgggtgcctccgggaacatgaaccagatccggcag
gtcgccgcgatgcgtggtctcgtggcgaacccgaagggcgagatcatcccgcggccgatc
aagtcgaacttccgcgagggcctgaccgtcctggagtacttcatcgcgacccacggtgcc
cgcaagggtctggccgacaccgcgctgcggacggccgactcgggctacctgacccgtcgt
ctggtggacgtctcccaggacgtgatcatccgcgaggacgactgcggcaccgagcgcggc
ctgcccaagcggatcggcgagcgccgtgaggacgggaccgtggtcaaggcggagaacgcc
gagaccgcggcgtacgcccgcacgtcggccgtcgacgtcgcgcacccggagaccggcgag
gtgctcgtccgggccggcgaggacctcggcgacgtgaagatcggcgagctgatctccgcg
ggcgtcgaggaggtcaaggtccgctccgtgctgacctgtgacgccaagaccggcacctgc
gcgaagtgctacggccggtcgctggcgaccggcaagctcgtcgacatcggtgaggccgtc
ggcatcatcgcggcccagtcgatcggcgagcccggcacccagctgacgatgcgtaccttc
cacaccggtggtgtggcctcggccgacgacatcacgcagggtctgccccgtgtggtcgag
ctcttcgaggcccgctcgcccaagggacgctcgccgatctccgaggccgccggccgggtg
acgatcgaggagagcgacaaggcgcgcaaggtgctgatcacccccgacgacggctccgag
gtccaggagtacccggtctcgaagcggtcccgcctcctggtgggggacggtgaccacatc
gaggtcggccagatgctcaccgtcggcacgcccgacccgcaggacgtcctgcggatcctg
ggggtgcggcgggcgcaggagcacctggtggacgaggtccaggccgtgtaccgctcgcag
ggtgtgtcgatccacgacaagcacatcgagatcatcgtgcggcagatgctgcgccggatc
acggtgatcgagtccggcgacaccaacctgctcccgtccgacctggtcgaccgggtgcgg
ttcgaggaggagaaccggcgcgtggtctccgagggcggcaagccggcctcgggccgtccg
gtcctgatgggcatcaccaaggcctcgctggcgacggagtcgtggctctcggcggcctcc
ttccaggagaccacccgggtgctcaccgacgccgccatccacgggcgcagcgactcgctg
cgcggcctgaaggagaacgtgatcatcggcaagctgatcccggcgggcaccggcctcgag
cggtaccgcaacatccgggtggagcccaccgaggaggcccgcgccgcggcgtactccgtc
accggctacgactcctacgactacgagttcggcaacgggaccggccaggccgtcgccctg
gacgacttcgactttgggtcctatcagaattag
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