Nocardioides sp. JS614: Noca_1118
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Entry
Noca_1118 CDS
T00443
Name
(GenBank) RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG
KO
K02405
RNA polymerase sigma factor FliA
Organism
nca
Nocardioides sp. JS614
Pathway
nca02020
Two-component system
nca02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nca00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Noca_1118
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Noca_1118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nca03021
]
Noca_1118
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
nca02035
]
Noca_1118
Transcription machinery [BR:
nca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Noca_1118
Bacterial motility proteins [BR:
nca02035
]
Flagellar system
Flagellar assembly proteins
Stator
Noca_1118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_23
Rv2175c_wHTH
HTH_AsnC-type
HTH_28
HTH_Tnp_4
Motif
Other DBs
NCBI-ProteinID:
ABL80634
LinkDB
All DBs
Position
complement(1184642..1185376)
Genome browser
AA seq
244 aa
AA seq
DB search
MRVQTDNTVDGLWERFKQDGDREARDRLVVHYSPLVKFVAGRVRSGLPPAVEHADLVSDG
VIGLLDALDKFDPERGLQFQTYAVSRIRGAMVDGLRAADWVPRSVREKIRDINTAQTELE
RRLGRAPKDAEVADRLGISVGDLRKIYSQTAHTSVVSFETVLDEEDTPRATTDLPGADDD
IPPGFLAAVRELPERDQVVVALYYWERLTLAEIGQVLGVSESRVSQLHSRATLALRRKLL
QVAG
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcgtgcagaccgacaacaccgtcgacggcctgtgggaacggttcaagcaggacggc
gaccgcgaggcccgcgaccgcctggtcgtgcactactcaccgctggtcaagttcgtcgcc
ggccgcgtccgctcgggcctcccgcccgcggtcgagcacgccgacctggtctccgacggg
gtgatcggcctgctggacgcgctggacaagttcgaccccgagcgcggcctgcagttccag
acctacgccgtctcccggatccgcggcgcgatggtcgacgggctccgcgccgcggactgg
gtgccgcgctcggtgcgcgagaagatccgcgacatcaacaccgcccagaccgagctcgag
cggcgcctgggacgcgcacccaaggacgccgaggtggccgaccggctcggcatcagtgtc
ggggacctccgcaagatctacagccagacggcgcacaccagcgtcgtcagcttcgagacg
gtgctcgacgaggaggacacgccgcgggccaccaccgacctgcccggcgccgacgacgac
atcccgccgggcttcctggccgcggtccgggagctgcccgagcgcgaccaggtggtcgtg
gcgctgtactactgggagcggctcaccctcgcggagatcggccaggtgctcggggtgagc
gagtcgcgggtcagccagctgcacagccgggcgacgctcgcgctgcggcgcaagctgctc
caggtcgccggctga
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