Nocardioides sp. JS614: Noca_1516
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Entry
Noca_1516 CDS
T00443
Name
(GenBank) ATP-dependent DNA helicase, Rep family
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
nca
Nocardioides sp. JS614
Pathway
nca03420
Nucleotide excision repair
nca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Noca_1516
03430 Mismatch repair
Noca_1516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nca03400
]
Noca_1516
Enzymes [BR:
nca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Noca_1516
DNA repair and recombination proteins [BR:
nca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Noca_1516
MMR (mismatch excision repair)
Other MMR factors
Noca_1516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
HRDC
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PSD2
Motif
Other DBs
NCBI-ProteinID:
ABL81030
UniProt:
A1SGU5
LinkDB
All DBs
Position
1610054..1612120
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AA seq
688 aa
AA seq
DB search
MATPADLLTALDPEQRQVAEALRGPVRVLAGAGTGKTRAITHRIAYGVASGVYAPTEVLA
VTFTTRAAGEMRSRLRALGAGPVQARTFHSAALRQLRYFWPTSYGTELPTLIESKIGLLA
TAARRQRLNADQALLRDLASEVEWAKVSNVHPDEYPIVAAQRGRSVSGHDPDTVARVFGS
YEEVKRGQGRMDMEDVLLLTAGLLAEDERVAAQVRRQYKWFVVDEFQDVSPIQSALLDLW
LGGRDELCVVGDPAQTIYSFAGANAAYLRDFPTRHPGTTSIELVRNYRSTPEVVGAANAL
LGGSASAGVQLRAQRPSGPPVTYTPRPDEVAEAESVAAQVLRLRDAGRSLGEVAVLFRIN
AQSEAFEEALAARGLPYVVRGAARFFDRPEVREAVTRLRGAARSGEAARAAESGDGDWVD
VVRAILAGMGWSPEAPTTRGQTRDRWESWQALVDQAAQFAAESARDGEAADLDAFVDHLD
RRAAEQHAPVADGVTLATFHAAKGLEWDSVFLCGLQDGTLPITYADTPAAVEEERRLLYV
GITRARVDLTLSWALSRNPGGRASRKPSRFLEPLLPDDARATRERPRGRKVANCRECGRP
LATGQELKRGRCADCPASYDEELFERLREWRRERAGEESVPAFVVFTDATLQLIAEHKPR
TPEALLRINGIGRSKLERYGDEVLTVVG
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggccacgcccgccgacctgctgaccgcgctcgatcccgagcagcgccaggtcgcggag
gcactgcgcgggccggtccgggtgctcgccggcgcgggcaccggcaagacccgcgcgatc
acgcaccggatcgcgtacggcgtggcctccggggtctacgcgcccaccgaggtgctcgcg
gtcacgttcaccacgcgagcggccggcgagatgcgcagtcggctgcgcgccctgggcgcc
ggcccggtccaggcccgcaccttccactcggccgcgctgcgccagctgcgctacttctgg
ccgacctcctatggcaccgagctgcccacgctcatcgagtccaagatcggcctgctggcc
acggccgcccggcgccagcggctcaacgccgaccaggcgctgctgcgtgacctggcctcg
gaggtcgagtgggccaaggtcagcaacgtccacccggacgagtaccccatcgtcgccgcc
cagcggggccgcagcgtctcgggccacgaccccgacaccgtcgcccgggtcttcgggagc
tacgaggaggtcaagcgcggccagggccggatggacatggaggacgtcctgctgctgacc
gccgggctgctcgccgaggacgagcgggtcgcggcccaggtgcgccgccagtacaagtgg
ttcgtcgtcgacgagttccaggacgtctcgccgatccagtccgcgctcctcgacctgtgg
ctcggcggccgcgacgagctgtgcgtggtcggcgacccggcgcagaccatctactccttc
gccggggcgaacgccgcctacctgcgcgacttcccgacccgccaccccggcacgacctcc
atcgagctggtccgcaactaccgctccacccccgaggtcgtcggggccgccaacgcgctg
ctcggcgggtccgcgagcgccggcgtccagctccgggcacagcggccctcggggccgccg
gtcacctacacgccgcggcccgacgaggtcgccgaggccgagtcggtcgccgcgcaggtg
ctccggctgcgcgatgccggccgctcgctcggtgaggtggccgtgctgttccgcatcaac
gcccagtccgaggcgttcgaggaggccctggccgcgcgcggcctcccgtacgtcgtgcgc
ggcgccgctcggttcttcgaccggccggaggtccgcgaggcggtcacccggctgcgtggc
gcggcccgatccggcgaggccgcccgagccgccgagagcggcgacggcgactgggtcgac
gtggtgcgggcgatcctggccggcatgggctggagcccggaggcacccacgacccgcggc
cagacccgcgaccggtgggagtcctggcaggcactggtggaccaggccgcccagttcgcc
gccgagtcggcacgcgacggcgaggccgccgacctcgacgcgttcgtcgaccacctcgac
cggcgcgccgccgagcagcacgccccggtcgccgacggggtcaccctcgcgaccttccac
gccgccaagggcctggagtgggactcggtgttcctctgtggcctccaggacggcaccctg
cccataacctacgccgacaccccggccgcggtcgaggaggagcgccggctcctctacgtc
ggcatcacccgggcccgcgtcgacctcacgctgtcctgggcgctctcgcgcaaccccggc
ggccgcgcctcccgcaagccctcgcgcttcctcgagccgctgctgcctgacgacgcgcgc
gccacgcgcgagcggccgcgcggccgcaaggtcgccaactgtcgcgagtgcgggcgtccg
ctcgccaccggccaggagctcaagcgcggccgctgcgcggactgcccggcgtcgtacgac
gaggagctcttcgagcgactgcgcgagtggcgccgcgagcgcgccggggaggagagcgtc
cccgcgttcgtggtcttcaccgacgccaccctccagctgatcgccgagcacaagccgcgc
acaccggaagcgctgctgcggatcaacgggatcggccggtccaagctcgagcggtacggc
gacgaggtgctcacggtcgtcggctga
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