Nocardioides sp. JS614: Noca_1715
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Entry
Noca_1715 CDS
T00443
Name
(GenBank) RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG
KO
K03090
RNA polymerase sigma-B factor
Organism
nca
Nocardioides sp. JS614
Brite
KEGG Orthology (KO) [BR:
nca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nca03021
]
Noca_1715
Transcription machinery [BR:
nca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Noca_1715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_23
HTH_Crp_2
HTH_3
Sigma70_ECF
MarR
HTH_26
MarR_2
HTH_24
LacI
HTH_31
HTH_28
HNF-1_N
Phage_antitermQ
KORA
YdaS_toxin
HTH_10
HTH_37
DUF134
HTH_Tnp_4
Motif
Other DBs
NCBI-ProteinID:
ABL81228
UniProt:
A1SHE3
LinkDB
All DBs
Position
complement(1818821..1819633)
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AA seq
270 aa
AA seq
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MFAVTGDGDADPDAPTGVELTRLRSAELFAMLRDDGAPAARRDAAREGLVHLHLPLVEHC
ARRFRNRGEPLEDLVQVGTIGLIKSVDRFDADRGVEFSTYATPTIIGEIKRYFRDKGWAI
RVPRRLQELRMQISTASAELTQSLGRSPTPRELAGAIGCTVEEIVEGIESSNAYSTLSLD
ATDDGDDNTASMLDAIGVDDEGLEHVEIRESLKPLLDRLEPREKKILLLRFFKNMTQSQI
AEEIGVSQMHVSRLLNRTLEQLRVSLEETS
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgttcgctgtcacgggggacggcgacgcggatccggacgcgccgaccggcgtcgagctc
acgcgcctgcgcagtgcggagctgttcgcgatgctgcgcgacgacggcgcaccggcggcc
cgccgggacgcggcccgcgagggactggtgcacctgcacctgccgctggtcgagcactgt
gcgcgccgcttccgcaaccgcggcgagccgctggaggacctcgtccaggtgggcacgatc
gggctgatcaagtccgtcgaccgcttcgacgccgaccgcggtgtggagttctcgacctat
gcgaccccgacgatcatcggggagatcaaacgctacttccgcgacaagggctgggcgatc
cgggtgccgcggcggctccaggagctgcgcatgcagatcagcacggcgtcggccgagctg
acccagtcgctgggccggtcgccgacgccgcgcgagctcgcgggcgccatcggctgcacc
gtcgaggagatcgtcgagggcatcgagtcgagcaacgcctactccacgctgtccctggac
gccaccgacgacggcgacgacaacaccgcgagcatgctcgacgcgatcggggtcgacgac
gaagggctggagcacgtcgagatccgggagtcgctcaagccgctgctggaccggctggag
ccgcgggagaagaagatcctgctgctgcgcttcttcaagaacatgacccagtcgcagatc
gccgaggagatcggcgtctcgcagatgcacgtctcccgcctgctcaaccggaccctcgag
cagctccgggtctccctggaggagacgagctga
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