Nocardioides sp. JS614: Noca_2963
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Entry
Noca_2963 CDS
T00443
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nca
Nocardioides sp. JS614
Pathway
nca02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nca00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Noca_2963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nca03021
]
Noca_2963
Transcription machinery [BR:
nca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Noca_2963
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
IF2_N
Motif
Other DBs
NCBI-ProteinID:
ABL82465
UniProt:
A1SKY0
LinkDB
All DBs
Position
complement(3148288..3149775)
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AA seq
495 aa
AA seq
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MFVSSNARKMLPAEVLTHPAVKALIERGTPTGSITPEEVRQASEDAAVEPRHLKALLGHL
SSLGIAVEIPVTSRAVAATSARKTATAKTAAAKKAPAKAAAAPAKSAPAKKAAPAKAAPR
KAAAEGAAGTESAEQTVTVGPDGKKVLPDLPDEQFEKDVAADPSIAEDEKQASFVVSAAD
DTDEPEQQVMVAGATADPVKDYLKQIGKVPLLNAEMEVELAKRIEAGLFSEEKLGKGGKL
SAKVSEELEWIAEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVE
KFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGRE
PTPEELAKELDMTPEKVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAIVPADAVSF
TLLQEQLHAVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSK
LRHPSRSQVLRDYLD
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
gtgttcgtgtcctcgaacgcgcgcaagatgcttcctgccgaggtgctcacgcaccctgcc
gtcaaggccctcatcgagcgaggtacgccgaccggcagcatcactccggaggaggtgcgc
caggccagtgaggacgcggccgtcgagccccgccacctcaaggcgctgctcgggcacctg
agctcgctgggcatcgcggtcgagatccccgtgaccagccgcgctgtcgcggccacctcg
gcccgcaagaccgccaccgccaagacggcggccgccaagaaggcaccggcgaaggcggcg
gccgcccccgcgaagtccgctcccgcgaagaaggcggcgccggcgaaggctgcgccccgc
aaggctgccgccgagggtgctgccggcaccgagtcggccgagcagaccgtgacggtcggc
ccggacggcaagaaggtgctgcccgacctgcccgacgagcagttcgagaaggacgtggcc
gccgacccgagcatcgccgaggacgagaagcaggcgtcgttcgtcgtctccgcggccgac
gacaccgacgagcccgagcagcaggtcatggtggccggcgccaccgcggacccggtcaag
gactacctcaagcagatcggcaaggtccccctgctcaacgccgagatggaggtcgagctc
gccaagcggatcgaggccggcctgttctccgaggagaagctcgggaagggcggcaagctc
tcggcgaaggtgtccgaggagctggagtggatcgccgaggacggccggcgcgcgaagaac
cacctgctcgaggcgaacctgcggctggtcgtctccctggcgaagcgctacacggggcgc
gggatgctgttcctggacctgatccaggagggcaacctcggcctgatccgcgcggtcgag
aagttcgactacaccaagggctacaagttctcgacctacgccacgtggtggatccgccag
gcgatcacccgcgcgatggccgaccaggcccgcaccatccggatcccggtgcacatggtc
gaggtcatcaacaagctggcccgcgtgcagcgccagatgctccaggacctgggccgcgag
cccactccggaggagctggccaaggagctcgacatgacccccgagaaggtcatcgaggtc
cagaagtacggccgcgagccgatctcgttgcacacccccctcggcgaggacggtgactcc
gagttcggcgacctgatcgaggactccgaggcgatcgtcccggccgacgccgtgtcgttc
acgctcctccaggagcagctgcacgccgtcctcgacacgctctccgagcgcgaggcgggc
gtggtcagcatgcgcttcggcctgaccgacggccagccgaagaccctcgacgagatcggc
aaggtgtacggcgtgacccgggagcggatccgccagatcgagtcgaagaccatgtccaag
ctgcggcacccgtcgcgctcccaggtgctgcgcgactacctggactga
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