Nocardioides sp. JS614: Noca_3006
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Entry
Noca_3006 CDS
T00443
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
nca
Nocardioides sp. JS614
Pathway
nca03030
DNA replication
nca03410
Base excision repair
nca03420
Nucleotide excision repair
nca03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Noca_3006
03410 Base excision repair
Noca_3006
03420 Nucleotide excision repair
Noca_3006
03440 Homologous recombination
Noca_3006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nca03032
]
Noca_3006
03400 DNA repair and recombination proteins [BR:
nca03400
]
Noca_3006
Enzymes [BR:
nca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Noca_3006
DNA replication proteins [BR:
nca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Noca_3006
DNA repair and recombination proteins [BR:
nca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Noca_3006
NER (nucleotide excision repair)
GGR (global genome repair) factors
Noca_3006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
ABL82508
UniProt:
A1SL23
LinkDB
All DBs
Position
complement(3202076..3204745)
Genome browser
AA seq
889 aa
AA seq
DB search
MPRLLLLDGHSLAYRAFFALPVENFSTTTGQHTNAVYGFTSMLINVLRDEQPTHVGVAFD
VSRQTFRLEEYADYKAKRNKTPTEFSSQLPLIEEVLNALRIPFLKKDGYEADDIIATLVT
RALEDPEMEVLILTGDRDSLQLVTDRSTVLYPMRGVSDLARMTPAAVEAKYGVPPARYPE
LAAIVGETSDNLPGVPGVGQGYAAKWINQFDGLDNVIARADEITGKKGEALRAHLGDVIR
NRHLNALVCDLELDRTPEQLAVQPWDRHEVHTLFDGLEFRVLRDRLFETLTSEEEIDDSG
FDVAMSVLGAGALAAWLEQHTASGERVGLHVAGHWSAGTGDVTSLALATTDGLAAWVAAD
QLDVADQTALAGWLADPKRPKVLHDAKGPMLALAAWGLPLAGLDRDTALSAYLARPDQRS
YDLADLTVRYLKRELKQGGADDGQLSLDGLDDRNAGEIEMLHARAVLDLAAALDDELEER
GGTRLLNDIELPLVDLLAKMEQTGIAVDTDHLEALESHFAAEVRDAAEQAFGVIGKEINL
GSPKQLQAVLFDELGMPKTKRTKTGYTTDADALQALYVKTEHPFLLHLLRHRDVSRLRQT
IEGLLKTVAGDGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTEEGRRIREGFVVGPGYES
LMTADYSQIEMRIMAHLSEDDLLIEAFKSGRDFHSITAARVFDVPADDVTVEMRAKIKAM
NYGLAYGLSAFGLGQQLGIEPSEARGLMDEYFQTFGGIRDYLGGVVEEARKAGFTETIWG
RRRYLPDLTSDNRQRREMAERMALNAPIQGSAADLIKIAMLNVDRAIAAAGLASRMLLQV
HDELVFEVAPGEQEPLEVLVREQMGAAADLAVPLDVSVGFGRSWHEAAH
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
gtgccccgcctcctgctcctcgacggccactcgctcgcgtatcgcgcgttcttcgcgctg
ccggtggagaacttctcgaccacgaccggccagcacaccaacgcggtctacggcttcacc
tcgatgctgatcaacgtgctgcgcgacgagcagccgacccacgtgggcgtggcgttcgac
gtgtcccggcagaccttccggctggaggagtacgccgactacaaggccaagcgcaacaag
acgccgaccgagttcagcagccagctgccgctgatcgaggaggtcctcaacgcgctgcgg
atcccgttcctgaagaaggacggctacgaggccgacgacatcatcgccacgctggtcacc
cgcgcgctcgaggaccccgagatggaggtgctgatcctcaccggcgaccgtgactcgctc
cagctggtcaccgaccgctcgaccgtgctctacccgatgcggggggtctccgacctggcc
cggatgacgccggcagcggtcgaggccaagtacggcgtcccgccggcgcgctaccccgag
ctcgcggcgatcgtgggggagacctccgacaacctcccgggtgtgccgggggtcggccag
ggctacgcggcgaagtggatcaaccagttcgacggcctcgacaacgtgatcgcccgcgcc
gacgagatcaccggcaagaagggcgaggcgctgcgggcccacctcggcgacgtgatccgc
aaccgccacctcaacgccctcgtgtgcgacctcgagctcgaccggacccccgagcagctc
gcggtgcagccgtgggaccgccacgaggtgcacacgctcttcgacggcctcgagttccgg
gtgctgcgcgaccgcctcttcgagacgctcacctcggaggaggagatcgacgactccggc
ttcgacgtcgcgatgagcgtgctgggcgccggcgcgctggcggcgtggctcgagcagcac
accgcctccggcgagcgggtcggcctgcacgtcgcggggcactggagcgcgggcaccggt
gacgtgacgtcgttggcgctggcgaccaccgacggcctcgcggcctgggtcgccgccgac
cagctcgacgtggccgaccagaccgcgctcgccgggtggctggccgatcccaagcggccc
aaggtgctccacgacgcgaaggggccgatgctcgccctggccgcctggggcctgccgctg
gccggcctggaccgggacaccgcgctctcggcgtacctcgcccggcccgaccagcgctcc
tacgacctggcggacctgaccgtgcgctacctcaagcgtgagctcaagcagggtggagcc
gacgacggccagctcagcctcgacggcctggacgaccggaacgccggcgagatcgagatg
ctgcacgcccgggccgtcctcgacctggccgcagcgctggacgacgagctcgaggagcgc
ggcggcacccgcctgctcaacgacatcgagctgccgctggtcgacctgctcgccaagatg
gagcagaccggcatcgccgtcgacaccgaccacctcgaggcgctggagagccacttcgcc
gccgaggtgcgcgacgcggccgagcaggcgttcggcgtgatcggcaaggagatcaacctc
ggctcgcccaagcagctgcaggccgtgctgttcgacgagctcgggatgccgaagaccaag
cgcaccaagaccggctacacgaccgacgcggacgcgctccaggcgctgtacgtcaagacc
gagcacccgttcctgctgcacctgctgcgccaccgcgacgtgtcccggctgcgccagacg
atcgagggcctgctcaagaccgtcgcgggcgacggccgcatccacacgacgttcaaccag
acgatcgccgcgaccggccgcctgtccagcaccgaacccaacctccagaacatcccgatc
cgcaccgaggagggccgccggatccgcgagggcttcgtggtcggtccggggtacgagtcg
ttgatgaccgccgactacagccagatcgagatgcggatcatggcgcacctgtccgaggac
gacctgctgatcgaggcgttcaagtccggtcgcgacttccactcgatcaccgccgcccgg
gtcttcgacgtgccggccgacgacgtcacggtcgagatgcgggccaagatcaaggcgatg
aactacggcctggcctacggcctgtccgcgttcggcctgggccaacagctcggcatcgag
ccgagcgaggcccgcgggctgatggacgagtacttccagaccttcggcgggatccgcgac
tacctcggcggcgtcgtcgaggaggcccgcaaggccgggttcaccgagaccatctggggc
cgtcgccgctacctgcccgacctcacgagcgacaaccgccagcgccgcgagatggccgag
cggatggcgctgaacgcgccgatccagggctcggccgccgacctgatcaagatcgcgatg
ctcaacgtcgaccgggcgatcgccgccgccgggctggcctcgcggatgctgctccaggtg
cacgacgagctcgtgttcgaggtggcgccgggggagcaggagccgctcgaggtcctggtc
cgcgagcagatgggcgccgccgcggacctcgccgtacccctcgacgtgagcgtgggcttc
ggccgcagctggcacgaggcggcccactga
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