Nocardioides sp. JS614: Noca_3050
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Entry
Noca_3050 CDS
T00443
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nca
Nocardioides sp. JS614
Pathway
nca03030
DNA replication
nca03430
Mismatch repair
nca03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Noca_3050
03430 Mismatch repair
Noca_3050
03440 Homologous recombination
Noca_3050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nca03032
]
Noca_3050
03400 DNA repair and recombination proteins [BR:
nca03400
]
Noca_3050
Enzymes [BR:
nca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Noca_3050
DNA replication proteins [BR:
nca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Noca_3050
DNA repair and recombination proteins [BR:
nca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Noca_3050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HHH_3
OB_MCM10
MamS_MamX
Motif
Other DBs
NCBI-ProteinID:
ABL82552
LinkDB
All DBs
Position
complement(3246765..3250316)
Genome browser
AA seq
1183 aa
AA seq
DB search
MSTGTQDSFVHLHVHTEYSMLDGASLLDGLFSRVADLQMPAIAMTDHGNLHGAFDFYSKA
RKHGVKPIIGIEAYITPGTGRGERRRVRWGKGDAAEEGGDDVAGGGAYTHMTMWAENTEG
MHNLFRLSSLSSLEGYFYKPRMDREILQQHSKGIIVSTGCPSGAIQTRLRLGQWDEAVRE
AGELQDIFGRENVFLELMDHGISIEKRVRDDLLRLGRQLGIPPLATNDSHYNNPDDADAH
DALICVASGKRLSDTNRLKFDGGGYYIKSPAEMRQLWTQHDLVEACDNTLAIAERCEVEF
VESTGGYMARADVPAGETEDSWFRKEVWRGIEARYPGDRLTQEVKDRVEMELAIISQKGY
CGYYLVVADFIQWSKRNGIRVGPGRGSGAGSIAAYALSITDLCPLEHGLFFERFLNPERP
SMPDFDIDFDDHRRGEVIKYVTEKYGADRVAQIATFGRLKAKAAIKDAARVLDFGFAISD
RITKALPADVMGKGVALKDIFDPGHKRYGEGGEFRSLHDSDPDVRRIYDTAVGLEGQIRN
WGVHAAGVIMSSEPLINVVPIMARPQDGAIITQFDYPMCESLGLVKMDFLGLSNLHILDD
AVANIEANRGEQVVLEELPFDDRATYELMGRGDTLGVFQLDGGGMRALLRSMQPDQFADI
TAVSALYRPGPMGADSHNKYARRKNGREPIEPIHPALAEALEPVLGETYGLIVYQEQVMA
IAQVLAGFTLGAADNLRRAMGKKKKEELDKQYAGFQSGMLERGFPQAAIDTLWAILLPFS
DYAFNKSHSAAYGVITYWTAYLKANYPAEYMAALLTSAKDDKDKLAIYLNECRRMKIQVL
PPDVNESAHNFTPVGNDIRFGLTAVRNVGSNVVDGIVAAREEKGRYEDFNDFLSKVPAQV
CNKRVFESLILAGAFDDMKHKRRALHLKHEEAVDRYVGLKREDEGQDSLFGGSGSDDVVF
DVSIALPDVDEWDKMTLLSREREMLGLYVSDHPLLGLEHVLANSSDCSIGQLMLDEDRPD
GSSVTISGLVTSVQRKITKRGDAWAMVTVEDLDGAIDVLLFPSAYQLAGPHLVEDAILTV
KGRLSRQKDQPEIHGQEVTVPDLSDGPSGPVVISLPSTRCTPPVVEQLKDVLGTHPGMTE
VRLRLLTREETLVMRLDDRLRVTPSPALFADLKQLLGPGCLTG
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaccggcacccaggactccttcgtccacctccacgtccacaccgagtactccatg
ctcgacggggcctcgctcctcgacggactgttcagccgggtggccgacctgcagatgccg
gcgatcgcgatgaccgaccacggcaacctgcacggtgcgttcgacttctactccaaggcc
cgcaagcacggcgtgaagccgatcatcggcatcgaggcctacatcacccccggcaccggc
cgcggcgagcgccggcgggtgcggtggggcaagggcgacgcggccgaggagggcggcgac
gacgtcgccggcggcggcgcctacacccacatgacgatgtgggccgagaacaccgagggc
atgcacaacctgttccggctctcctcgctgtccagcctcgagggctacttctacaagccc
cggatggacagggagatcctccagcagcacagcaagggcatcatcgtcagcaccggctgc
cccagcggcgccatccagacccggctccggctgggccagtgggacgaggcggtccgcgag
gccggggagctgcaggacatcttcggtcgcgagaacgtgttcctcgagctgatggaccac
ggcatctccatcgagaagcgggtccgcgacgacctgctccggctcggccgccagctcggc
atcccgccgctggcgaccaacgactcgcactacaacaaccccgacgacgcggacgcccac
gacgccctgatctgtgtggcctccggcaagcggctctccgacaccaaccggctcaagttc
gacggcggtggctactacatcaagtcaccggccgagatgcgccagctctggacccagcac
gacctcgtcgaggcctgcgacaacaccctcgccatcgcggagcgctgcgaggtggagttc
gtcgagtccacgggcggctacatggcccgcgccgacgtcccggccggcgagaccgaggac
agctggttccgcaaggaggtctggcgcggcatcgaggcccgttatcccggcgaccggctg
acccaggaggtcaaggaccgcgtcgagatggagctcgcgatcatctcgcagaagggctac
tgcggctactacctcgtggtcgccgacttcatccagtggtccaagcgcaacggcatccgc
gtcggtccgggccgcggctccggtgcgggctcgatcgcggcgtacgcactgagcatcacc
gacctctgcccgctcgagcacgggctgttcttcgagcgcttcctcaaccccgagcgcccg
tcgatgcccgacttcgacatcgacttcgacgaccaccgccgcggcgaggtcatcaagtac
gtcaccgagaagtacggcgccgaccgggtcgcccagatcgccaccttcggccggctcaag
gcgaaggccgcgatcaaggacgccgcccgggtgctcgacttcggcttcgcgatctccgac
cggatcaccaaggcgctcccggccgacgtgatgggcaagggcgtcgcgctcaaggacatc
ttcgaccccggtcacaagcggtacggcgagggcggcgagttccggtcgctgcacgactcc
gacccggacgtgcgccggatctacgacaccgcggtcgggctcgagggccagatccgcaac
tggggcgtgcacgcggccggcgtgatcatgtccagcgagccgctgatcaacgtcgtgccg
atcatggcccgcccgcaggacggcgcgatcatcacccagttcgactacccgatgtgcgag
tcgctcgggctggtcaagatggacttcctcggcctgagcaacctgcacatcctcgacgac
gcggtcgcgaacatcgaggccaaccggggcgagcaggtcgtcctcgaggagctgcccttc
gacgaccgggcgacctacgagctgatgggtcgcggggacacgctgggcgtgttccagctc
gatggtggcggcatgcgcgcgctactgcgctcgatgcagccggaccagttcgccgacatc
accgcggtcagcgcgctctaccggcccggcccgatgggtgcggactcccacaacaagtac
gcccgccgcaagaacggccgcgagccgatcgagcccatccacccggcgctggccgaggct
ctcgagccggtgctcggggagacctacggcctgatcgtctaccaggagcaggtgatggcg
atcgcccaggtcctcgcgggcttcacgctgggcgccgcggacaacctgcgccgggcgatg
ggcaagaagaagaaggaggagctcgacaagcagtacgccggcttccagtccggcatgctc
gagcgcggcttcccgcaggcggcgatcgacacgctctgggcgatcctgctgccgttctcc
gactacgcgttcaacaagtcgcactccgcggcctacggcgtcatcacgtactggaccgcc
tacctcaaggcgaactaccccgccgagtacatggccgccctcctgacgtccgcgaaggac
gacaaggacaagctcgccatctacctcaacgagtgccgccggatgaagatccaggtgctc
ccgccggacgtcaacgagtcggcccacaacttcacgccggtcggcaacgacatccgcttc
ggcctgacggccgtccgcaacgtcggcagcaacgtcgtcgacggcatcgtcgctgcccgc
gaggagaagggccgctacgaggacttcaacgacttcctgtccaaggtccccgcccaggtg
tgcaacaagcgggtcttcgagtcgctgatcctggccggcgccttcgacgacatgaagcac
aagcgccgcgccctccacctcaagcacgaggaggcggtggaccgctacgtcggcctcaag
cgcgaggacgagggccaggactcgctgttcggtggctcgggctcggacgacgtcgtcttc
gacgtcagcatcgcgctccccgacgtcgacgagtgggacaagatgaccctgctcagccgc
gagcgggagatgctcgggctctacgtctccgaccacccgctgctgggtctcgagcacgtg
ctggccaacagcagcgactgcagcatcggccagctgatgctcgacgaggaccggccggac
gggtcctcggtcacgatcagcggcctggtcaccagcgtccagcgcaagatcaccaagcgc
ggtgacgcgtgggcgatggtgaccgtcgaggacctggacggcgcgatcgacgtgttgctg
ttcccgagcgcctaccagctggccggcccgcacctggtcgaggacgcgatcctcaccgtc
aagggccggctctcccggcagaaggaccagccggagatccacggccaggaggtcaccgtc
cccgacctctccgacggcccgtccgggccggtggtgatcagcctcccctccacccggtgc
acgccgccggtcgtcgagcagctcaaggacgtcctcggcacccacccggggatgaccgag
gtccgcctgcgactcttgacccgtgaggagaccttggtcatgcgcctcgacgaccggctc
cgggtcaccccgagcccggcgctgttcgccgacctcaagcagctgctggggcccgggtgc
ctgacggggtga
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