Nocardioides sp. JS614: Noca_3090
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Entry
Noca_3090 CDS
T00443
Name
(GenBank) Endonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
nca
Nocardioides sp. JS614
Pathway
nca03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Noca_3090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nca03400
]
Noca_3090
Enzymes [BR:
nca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
Noca_3090
DNA repair and recombination proteins [BR:
nca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Noca_3090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
ABL82592
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All DBs
Position
3292202..3293086
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AA seq
294 aa
AA seq
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MLDPALRNPIGTHVLVGKGLVDGAVANADLVACETFQVFTGNPRGWALSEGKPADDARFR
DLMAARGTRVFIHAPYLVNLGSPTPATYERSVASVAHNLKRAAEIGAEGVVVHTGSYVDP
GEGDSLARHARAMRQVREGLLPLLDAVAGDDAPWLLLEPTAGQGRSLCAGVEDLAPYLEA
LDHHPKAGICLDTCHVFAAGAPLDEPGGTTATVDRVVEIGGPGRLRLVHANDSMDVRGAF
KDRHQRIGEGHIGEGAFTELFAHPATEGVPFILETPDSRDVDNRDIPLLKKLRG
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgaccccgccctccgcaacccgatcgggacccacgtgctcgtcggcaagggcctc
gtcgacggcgccgtcgcgaacgcggacctggtcgcctgcgagaccttccaggtcttcacc
ggcaacccccgcggctgggcgctgagcgagggcaagccggccgacgacgcgcgcttccgc
gacctgatggccgcgcgcgggacccgggtgttcatccacgcgccgtacctcgtgaacctc
ggctcgccgaccccggcgacctacgagcgctcggtggcctcggtggcgcacaacctcaag
cgggcggcggagatcggcgccgagggcgtcgtcgtgcacaccgggtcgtacgtcgacccc
ggcgagggcgacagcctcgcgcggcacgcgcgcgcgatgcggcaggtgcgcgagggactc
ctgcccctgctcgacgccgtcgccggcgacgatgcaccctggctgctgctcgagccgacc
gccggccagggccgctccctgtgcgccggcgtcgaggacctcgcgccgtacctcgaggcc
ctcgaccaccacccgaaggccggcatctgcctggacacctgccacgtgttcgccgccggg
gcgccgctggacgagccgggcggcaccaccgcgaccgtggaccgggtggtcgagatcggc
ggcccgggccggctgcggctggtgcacgccaacgactcgatggacgtccgcggcgccttc
aaggaccggcaccagcggatcggcgagggccacatcggcgagggcgcgttcaccgagctg
ttcgcgcacccggccaccgaaggcgtgccgttcatcctcgagacgcccgactcgcgcgac
gtcgacaaccgcgacatcccgctgctgaagaagctgcgcggatga
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