Nocardioides sp. JS614: Noca_3128
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Entry
Noca_3128 CDS
T00443
Name
(GenBank) DNA polymerase III, epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
nca
Nocardioides sp. JS614
Pathway
nca03030
DNA replication
nca03430
Mismatch repair
nca03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Noca_3128
03430 Mismatch repair
Noca_3128
03440 Homologous recombination
Noca_3128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nca03032
]
Noca_3128
03400 DNA repair and recombination proteins [BR:
nca03400
]
Noca_3128
Enzymes [BR:
nca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Noca_3128
DNA replication proteins [BR:
nca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Noca_3128
DNA repair and recombination proteins [BR:
nca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Noca_3128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
UVR
CCDC39
DEDDh_C
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
ABL82630
UniProt:
A1SLE5
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All DBs
Position
3330957..3332762
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AA seq
601 aa
AA seq
DB search
MSSRVGEAGSRWESQRSFDELGRPLRDITFCVVDLETTGGSAEGGAMITEIGAVKVRGGE
VLGEFQTLVNPRTEIPAFIAVLTGISNSMVADAPPVEAALPAFLEFAAGSVLVAHNAPFD
VGFLRYFAEQQGRPWPGFEVVDTARLARRVVSRDDAPNCKLSSLAKAFGSTTTPNHRALS
DARATVDVLHGLMERLGGVGVHTLEELQTFSSRVSSAQRRKRHLAEGLPHAPGVYLFRDE
QAQVLYVGTSRDLRTRVRSYFTASETRSRMGEMVGIATVVDAIECATALEAEVRELRLIA
EHKPKYNRRSRNPSKVHFIKLTREPWPRLSLVRRVLDDDADYLGPFSSKKTAEKCLAALH
ETFPVRQCTDRLPGDPAAAGRAPCVLAEMGRCLAPCDGSVDHATYAAVVHQLRDTLLRRP
DEVVETINAKMGALAADERFEEAGVHRDRLAAFVRAAARTQRLSALTRCPEVVAARREDD
PTGPGGRWAVHVVRHGRLAAAGVIPAGADAHAYVATLRLSAETVAAAPGPVPAASAEETE
RILRWLESPGIRLVDVDGEWSCPVAGATRHLAIHDSANQSRLSLVPFAERRVLTTMHQPV
R
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccgtgtcggagaggccggctcccgctgggagtcgcagcgcagcttcgacgag
ctcggccgcccgctgcgcgacatcaccttctgcgtggtcgacctggagaccaccggtggc
tcggccgagggcggcgcgatgatcaccgagatcggcgccgtcaaggtgcgcggcggcgag
gtcctcggcgagttccagacgctggtcaacccgcgcaccgagatcccggcgttcatcgcc
gtcctcaccggcatcagcaactcgatggtcgccgacgcgcccccggtcgaggccgccctc
ccggcgttcctggagttcgccgccggcagcgtcctggtcgcccacaacgcgcccttcgac
gtcggcttcctgcgctacttcgccgagcagcagggccggccgtggcccggcttcgaggtg
gtcgacaccgcccgcctcgcgcggcgggtggtcagccgcgacgacgcccccaactgcaag
ctgtcctccctggcgaaggcgttcggctccacgaccacgcccaaccaccgcgcgctgtcc
gacgcccgggcgaccgtcgacgtgctgcacgggctgatggagcggctcggcggcgtcggc
gtgcacacgctcgaggagctccagaccttctcctcccgggtcagctccgcccagcggcgc
aagcggcacctggccgagggtctcccccacgccccgggtgtgtacctgttccgcgacgag
caggcccaggtgctctacgtcggcacctcccgcgacctgcgcacccgcgtccggtcctac
ttcaccgcctccgagacccggtcccggatgggcgagatggtcggcatcgccaccgtggtc
gacgccatcgagtgcgccaccgcgctcgaggccgaggtccgcgagcttcggctgatcgcc
gagcacaagccgaagtacaaccggcgctcgcgcaacccctcgaaggtccacttcatcaag
ctcacccgggagccctggccgcggctctcgctggtgcgccgggtgctcgacgacgacgcc
gactacctcggtccgttctcgtcgaagaagacggccgagaagtgcctggccgcgctgcac
gagacgttccccgtccggcagtgcaccgaccggctgcccggcgacccggccgccgccgga
cgcgcgccgtgcgtgctggccgagatgggccgctgcctggccccgtgcgacggcagcgtc
gaccacgcgacgtacgccgccgtcgtccaccagctgcgcgacacgctgctgcgccgcccc
gacgaggtcgtcgagacgatcaacgccaagatgggggcgctggccgccgacgaacggttc
gaggaggccggcgtccatcgcgacaggctggccgccttcgtccgcgccgccgcgcggacc
cagcgactctccgcgctcacccgctgccccgaggtggtcgccgcccgccgcgaggacgac
ccgaccggaccgggcggccggtgggcggtgcacgtcgtgcgccacggccggctggccgcg
gccggggtgatcccggccggcgccgacgcgcacgcgtacgtcgccaccctgcgcctgtcc
gccgagacggtcgccgcggcgccgggcccggtgcccgcggcgagcgccgaggagaccgag
aggatcctgcggtggctggagtccccggggatccgcctcgtcgacgtggacggcgagtgg
agctgcccggtggccggcgcgacccgccacctcgcgatccacgactcggccaaccagtca
cggctgtcgctggtgccgttcgccgagcggcgggtgctcaccaccatgcatcagccggtg
cgctga
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