Nocardioides sp. JS614: Noca_3216
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Entry
Noca_3216 CDS
T00443
Name
(GenBank) extracellular solute-binding protein, family 1
KO
K02055
putative spermidine/putrescine transport system substrate-binding protein
Organism
nca
Nocardioides sp. JS614
Pathway
nca02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
nca00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Noca_3216
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
nca02000
]
Noca_3216
Transporters [BR:
nca02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
Noca_3216
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_8
SBP_bac_6
SBP_bac_1
SBP_bac_11
DUF58
Motif
Other DBs
NCBI-ProteinID:
ABL82718
UniProt:
A1SLN3
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All DBs
Position
complement(3414046..3415263)
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AA seq
405 aa
AA seq
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MRRIGSTRLAAVACASVLALAASACGTSSGDGDGGGAKAGEKQGGFTAPDVPMAEAIGDP
EGQVSILAWPGYAEDGSTDKSIDWVTPFEKESGCQANVKYFATSDEAVQLMKTGEYDVVS
ASGDATLRLIAGGDVAPVNTDLLTNYGDIADFLKDQQFNSVGGQMYGVPHGWGANLLMYT
KDVVSPAPTSWGAVFDGASEYAGKVTAYDSPIYIADAALYLMKTQPDLGIKDPYALDEDQ
LAAAVDLLKAQKANVSEYWSDYLKEVAAFKSGDSVIGTTWQVIASTIGDSVEAVLPEEGS
TGWSDTWMISSKAPNPNCGYLWMDYITSPKAQAAVAEYFGEAPANVKACDLTSEGFCDTY
HVTDADYAAQIHYWTTPIEQCLDGRTDVTCTDYGQWTTAWTEIKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgagacggatcggatccacgcggctggcggccgtggcctgcgcgagcgtgctcgcactc
gccgcctccgcctgcggcacgagctcgggagacggcgacggaggcggagcgaaggccggc
gagaagcagggtggcttcaccgcccccgacgtgccgatggccgaggcgatcggcgacccg
gagggacaggtgagcatcctggcctggcccggctacgccgaggacgggtcgaccgacaag
tcgatcgactgggtcacgccgttcgagaaggagagcggctgccaggcgaacgtgaagtac
ttcgcgacctccgacgaggccgtgcagctgatgaagaccggcgagtacgacgtggtctcg
gcgtccggcgatgcgacgttgcgcctgatcgcgggtggcgacgtggcgcccgtcaacacc
gacctgctcaccaactacggcgacatcgcggacttcctgaaggaccagcagttcaactcc
gtcggtggccagatgtacggcgtgccgcacggctggggcgccaacctgctgatgtacacc
aaggacgtcgtcagcccggcaccgaccagctggggtgcggtcttcgacggcgcgtcggag
tacgccggcaaggtcacggcgtacgactcgccgatctacatcgccgacgccgcgctgtac
ctgatgaagacgcagcccgacctcgggatcaaggacccgtacgcgctcgacgaggaccag
ctcgccgcggccgtcgacctgctcaaggcgcagaaggcgaacgtctcggagtactggtcg
gactacctcaaggaggtcgcggcgttcaagagcggcgactcggtgatcggcacgacgtgg
caggtcatcgcgtcgacgatcggcgactcggtcgaggccgtcctgcccgaggagggctcg
accggctggtcggacacctggatgatcagctcgaaggcgccgaaccccaactgtggctat
ctctggatggactacatcaccagcccgaaggcgcaggccgcggtcgcggagtacttcggc
gaggcgccggccaacgtgaaggcgtgcgacctgacctcggagggcttctgcgacacctac
cacgtgaccgacgccgactacgcggcgcagatccactactggaccacgccgatcgagcag
tgcctggacggccgcacggacgtgacgtgcaccgactacggccagtggaccaccgcgtgg
accgagatcaaggggtga
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