Nocardioides sp. JS614: Noca_4601
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Entry
Noca_4601 CDS
T00443
Name
(GenBank) ATP-dependent RNA helicase CsdA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nca
Nocardioides sp. JS614
Pathway
nca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Noca_4601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nca03019
]
Noca_4601
03009 Ribosome biogenesis [BR:
nca03009
]
Noca_4601
Enzymes [BR:
nca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Noca_4601
Messenger RNA biogenesis [BR:
nca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Noca_4601
Ribosome biogenesis [BR:
nca03009
]
Prokaryotic type
rRNA helicases
Noca_4601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
adh_short
Cas3-like_C_2
UvrA_inter
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABL84096
UniProt:
A1SQL1
LinkDB
All DBs
Position
complement(4875022..4876791)
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AA seq
589 aa
AA seq
DB search
MSSDEQDDTTTPEVTFADLGLSDQVLKALADVGYEKPSAIQAATIPPLLAGRDVVGLAQT
GTGKTAAFALPILSRLDLTQTTPQALVLAPTRELALQVCEAFERYAAHVKGVHVLPVYGG
QGYGVQLSALRRGVHVVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLNMGFAEDVET
ILADTPDDKNVALFSATMPAQIRRISKKYLDDPAEITVKGKTATASNITQRYLTVSYPQK
VDALTRILEVENFEGMIVFVRTKNETETLAEKLRARGLSAMAINGDVAQAQRERTVNQLK
SGKLDILVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAISFVTPR
ERYLLKHIEKATRQPLTQMQLPTVEDVNSTRLSRFDDAITEALSQTQRIDAFRDIVAHYV
REHDVPEADVAAALAVVAQGETPLLLDPADRANELRAPREERAGQGTRRDRHDHGGPGGH
GGPPRERRPRGRSDVPMATYRIAVGKRHKVEPRQIVGAIANEGGLSRQDFGHIDIRGDHS
LVELPADLPAGAWDSLRSTRISGKLIELTRDGGGPAADTRHKKPRHKTR
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagcgacgagcaggacgacacgaccacccccgaggtgacgttcgccgacctcggg
ctcagcgaccaggtgctgaaggcgctggccgacgtcgggtacgagaagccctccgcgatc
caggccgccacgatcccaccgctcctggccggccgtgacgtcgtcggcctcgcgcagacc
ggcaccggcaagaccgcggcgttcgcgctgccgatcctctctcggctggacctcacgcag
acgacgccgcaggcgctggtgctggcgccgacccgcgagctcgcgctccaggtctgcgag
gcgttcgagcggtacgccgcgcacgtcaagggcgtgcacgtgctgccggtgtacggcggg
cagggctacggcgtccagctcagcgcgctgcgtcgcggcgtgcacgtcgtcgtcggcacc
cccggccggatcatggaccacctggagaagggcacgctcgacctgtccgagctgcgcttc
ctggtcctcgacgaggccgacgagatgctgaacatgggcttcgccgaggacgtcgagacg
atcctggccgacacccccgacgacaagaacgtcgcgctgttctcggccacgatgcccgcg
cagatccgccggatctcgaagaagtacctcgacgaccccgccgagatcaccgtcaagggc
aagacggccaccgcctcgaacatcacccagcgctacctgacggtgtcctacccgcagaag
gtcgacgccctcacccggatcctcgaggtcgagaacttcgagggcatgatcgtcttcgtc
cgcaccaagaacgagaccgagacgctggccgagaagctccgagcccgcggcctgtccgcg
atggcgatcaacggcgacgtcgcccaggcgcagcgcgaacgcacggtcaaccagctgaag
tcgggcaagctcgacatcctggtcgccaccgacgtcgccgcccgcggcctggacgtcgaa
cggatcagccacgtcgtgaactacgacatccccaccgacaccgagtcctacgtgcaccgg
atcgggcgcaccgggcgggccgggcgcagcggcgacgcgatctcgttcgtcaccccccgc
gagcgctacctgctcaagcacatcgagaaggcgacccggcagccgctgacccagatgcag
ctgcccaccgtcgaggacgtcaacagcacccgtctgtcccgcttcgacgacgcgatcacc
gaggcgctctcgcagacccagcggatcgacgcgttccgcgacatcgtcgcccactacgtc
cgcgagcacgacgtgcccgaggccgacgtcgccgcggccctcgcggtggtggcccagggg
gagaccccgctgctgctcgatccggccgaccgcgcgaacgagctccgggcgccccgcgag
gagcgcgccggccagggcacccgccgggaccgccacgaccacggcggccccggcggccac
ggcggcccgcctcgcgagcgccggccccgcgggcgcagcgacgtcccgatggcgacgtac
cggatcgcggtgggcaagcgacacaaggtcgagcctcgccagatcgtcggggcgatcgcc
aacgagggcggcctgtcgcgccaggacttcgggcacatcgacatccgcggcgaccactcg
ctggtcgagctgcccgccgacctcccggccggcgcgtgggacagcctgcgctcgacccgg
atctccgggaagctgatcgagctcacccgcgacggcggcggccccgcggccgacacccga
cacaagaagccccgccacaagacccgttga
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