Sciurus carolinensis (gray squirrel): 124958101
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Entry
124958101 CDS
T08117
Name
(RefSeq) transcription termination factor 2-like isoform X1
KO
K15173
transcription termination factor 2 [EC:5.6.2.-]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04918
Thyroid hormone synthesis
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09150 Organismal Systems
09152 Endocrine system
04918 Thyroid hormone synthesis
124958101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124958101
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124958101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Zn_ribbon_GRF
DEAD
Motif
Other DBs
NCBI-GeneID:
124958101
NCBI-ProteinID:
XP_047371756
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All DBs
Position
1:complement(104741824..104780769)
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AA seq
1166 aa
AA seq
DB search
MIGSERRGRSKRRKQWLRTGLYGRRGRSTMEVVKCPEHGTFCFLKTGVRDGPNKGKSFFV
CRADTCGFVRATDIPASHCLLHEDFVVELQGLFVPQGKKKYRLFFRCTKSKAEGKRWCGS
IPWQDPNSKEDPIANKSQYASEPFPHPSSLPRNPFKVLDKNQKPALWKQFVKGEGEENMA
GKKSREKGDQPLDQKPESNCWVEKEVSSGLVIKKKQSEVQEKQQQQRTEETKGITYRQHL
GNELRGPSASPQKSDGESKDVQNKSESSREKETQLLPHKFHGQNPGSQPQKGEALSKGHI
KNLEAKEAKAKDGPGMQTFQKRLPQRHFQAPSETQGPAPKGQAAPGLSLGEGRHAASSSG
ESEEDDVSCIPGSPLLFDLTMNSQKTENLQLPVQSMQRKISTASDVSKKVESSDSAAQRV
YLTTQLKQKKSTLAMVNIQALPDKGEKLLKQIQGLEEALSALALSPEQGTNEKSNTQVQQ
STLTKNTSAPPHVVSSEPLLGHDLQPLGPVRLQADCQVTAGRLSQCSGGPRNQDRLHPVW
KITSEAIDELHRSLESRPGETVVAEDPPGLKVPLLLHQKQALAWLLWRESQKPQGGILAD
DMGLGKTLTMIALILTQKNQEKSQKRDENIALTWLSKDDSSDFTSHGTLIVCPASLIHHW
KNEVEKRVNSNKLRVYLYHGPHRNLNAKALSMYDVVITTYSLLAKEIPTVKHEGEVPGAN
LSVKGISTPLLQIVWARIILDEAHNVKNPRVQTSIAVCKLQAHARWAVTGTPIQNNLLDM
YSLLKFLRCSPFDEFNLWKSQVDNGSKKGGERLSILTKSLLLRRTKDQLDSTGKPLVRLP
QRKFQLHHLKLSEDEELVYSVFFARSRCALQSYLKRYESGNNQSGRSPDNPFSRVAQEFG
SSGPGQTMAADSQRSSTVHILSQLLRLRQCCCHLSLLKSALDPTELKSEGLVLSLEEQLS
ALTLSELHDSEPSRAVSLNGTSFKVELFEDTQVSTKISSLLAELEAIRRNSESQKSVIVS
QWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLN
LTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDL
AKQVLSGSGESVTKLTLADLKILFGI
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgattggttccgaacggcggggtcgcagtaaaaggcggaagcagtggttgagaaccggg
ctttatgggcgccgaggaaggagcactatggaagtagttaagtgtcctgagcacgggacc
ttctgctttttgaaaaccggcgttcgcgatggcccgaataaaggaaagagcttctttgtg
tgccgagcagacacgtgcggcttcgtgcgggccaccgacattcctgcttctcattgttta
ttgcatgaggactttgtggtagagcttcagggtttgtttgtaccacagggcaagaaaaaa
tacagattattcttccgatgcactaaaagcaaggcagaggggaaacgctggtgtggaagt
attccatggcaggatcctaattctaaagaagatcctatagccaataaatctcagtatgca
tctgagccatttcctcatccttccagcctgccaagaaacccattcaaagtgcttgacaag
aatcaaaaaccagctctctggaaacagtttgtcaaaggggaaggggaggaaaatatggct
ggtaagaagtcaagggaaaagggagatcagcccttggatcaaaagcccgaatctaactgc
tgggtggagaaagaggtctcctctggtctagtgataaagaaaaagcaatctgaagttcaa
gagaagcagcaacagcagagaacagaggaaactaaaggaattacatacagacagcaccta
gggaatgaactgagaggaccatctgcatctcctcagaagtcagatggtgagagtaaagat
gtccaaaacaaatcagaatcttcaagagaaaaggaaacccaacttttgcctcataagttt
catggtcagaacccaggaagtcagccccagaaaggggaggccctcagcaaggggcacatc
aagaacttggaggctaaagaagcaaaggcaaaggatggcccaggcatgcagaccttccag
aaaaggctgccccagagacatttccaggcaccctctgagactcagggacctgctcctaaa
ggacaagcagcaccagggctttccctgggagaggggcgccatgctgcctccagcagtggt
gaaagtgaggaagatgatgtttcctgtataccaggaagccccctgctctttgacttgact
atgaattcacagaaaacagagaaccttcaacttcctgttcaaagtatgcaaagaaaaata
tctactgcttcagatgtttccaagaaggtagaatcctctgactcagctgctcagcgagtg
taccttacaacacaactgaaacaaaagaagagcacattggcaatggtgaatatccaggct
cttccagacaaaggtgaaaagttactcaagcaaatccaggggttggaggaagcactcagt
gctcttgccctctcccccgagcaaggaactaatgagaagagtaacactcaagtacaacag
agtaccctcaccaaaaacacttctgcccctcctcacgtggtgtcttctgagcctcttctg
ggtcatgatctccagcctctgggtcctgtaaggctacaggcagactgccaggtcactgct
ggaagactcagccagtgctctggaggccctaggaaccaagatcgccttcatccagtatgg
aaaataacaagtgaagccattgatgagctgcatcgatcactggagtcacgtcctggtgaa
acagtagtagcagaagatccacctggcttgaaggtccctctgctactacaccagaagcag
gcgttagcctggttactatggcgggaaagtcaaaagccacagggtggaattctggcagac
gatatgggcttaggaaaaaccctgacaatgattgcactcatactaacccaaaaaaatcag
gagaaaagccaaaaaagggatgaaaacatagctctgacatggctttctaaagatgactcc
tctgactttacttcccatggaacactaattgtctgtcctgcttccctcatccatcattgg
aaaaatgaggtcgagaaacgtgtgaacagcaacaaactaagagtctatctctatcatggg
ccacacaggaatctgaacgcaaaagccctctctatgtatgacgtcgtgattactacttac
agccttctggccaaggagattcccacagtgaagcatgagggagaggtcccaggtgcaaac
ctcagtgtgaagggcatctcaacacctttgcttcaaatagtctgggctcgaatcatattg
gatgaagctcataatgtaaagaatccccgtgtgcagacatccattgctgtgtgtaagctg
caagctcatgcccgttgggctgtcactggaacccctattcaaaacaacttgttggatatg
tattcactgctgaaatttctccgctgttctccatttgatgagttcaatctgtggaaaagt
caggttgacaatggttcaaagaaaggaggagaacggttaagtattttaaccaagagcctt
ttgctgaggagaacaaaggaccaactggactctactggcaaacccttggtgaggctgccc
caacgtaaatttcagttgcaccatttaaagctttctgaagatgaagagctggtttatagt
gtcttttttgcaagatcaaggtgtgctctgcagtcctatctaaaaagatatgaaagtgga
aacaaccaatctggaagaagccctgataatccattcagcagagtggcacaggagtttggg
tccagtgggcctgggcagaccatggcagcagactcacagagatccagcaccgttcacata
ctgtcccagttgctgagactccgtcagtgttgctgccatctttctttactgaagtcggcc
ctggaccctacagaactgaagagcgaaggccttgtcctgtccctggaggaacagctcagt
gctttgaccttgtccgaactccatgactcagaaccatctcgtgctgtttcccttaatggt
acatccttcaaggtggaactttttgaagacacacaagtgagcaccaagatatcatctctg
ttggcagagttggaggcaatccgaagaaattcagagtcccaaaagagtgtcattgtctct
cagtggaccaacatgctgaaagttgtagcactgcatcttaagaagcacggattgacttat
gccactattgatggctccgtcaaccccaaacagagaatggacttggtggaggcatttaac
cactccagaggccctcaggttatgctaatctctctcttggctggaggtgttggtctaaac
ctgactggaggaaatcatctttttcttctggatatgcactggaatccatcacttgaagat
caggcttgtgaccgaatttaccgagtaggacagcagaaagatgttgtcatacacaggttc
gtttgtgaaggaacagtggaagagaagatcttacagctccaggaaaaaaagaaagatctg
gccaaacaggttctatctggatctggagaatctgtcaccaagctcaccttggctgacctc
aaaatcctttttggcatctaa
DBGET
integrated database retrieval system
