Sciurus carolinensis (gray squirrel): 124958111
Help
Entry
124958111 CDS
T08117
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04068
FoxO signaling pathway
ncar05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
124958111
09160 Human Diseases
09163 Immune disease
05340 Primary immunodeficiency
124958111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncar04121
]
124958111
Enzymes [BR:
ncar01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124958111
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124958111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAG1
RAG1_imp_bd
zf-RAG1
zf-C3HC4
zf-C3HC4_2
zf-RING_6
zf-RING_2
zf-RING_10
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
124958111
NCBI-ProteinID:
XP_047371765
LinkDB
All DBs
Position
11:complement(41609345..41612476)
Genome browser
AA seq
1043 aa
AA seq
DB search
MAVSLPPTLGLSSAPDEIQHPHIKFSEWKFKLFRVRSFEKTTEETQKDKKDSSEGKPSLE
QSPAAMDKSGDQKPVPTQSALKGPPKFSKKSHDGGKARDKAMHQANLRHFCRICGNYFKT
DEHNRRYPVHGPVDAKTQVLLRKKEKRVTSWPDLIARVFRIDVKADVDTIHPTEFCHNCW
SIMHRKFSSAPCEVYFPRNATMEWHPHAPSCDICHTARRGLKRKRPQPNVQLSKKLKTVL
DRARQARRHKRRAQARISSKEVMKRITNCSKIHLSTKLLAVDFPAHFVKSISCQICEHIL
ADPVETSCKHVFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLSILNSLVVKCPA
KECNEEVSLEKYNHHVSSHKESKETFVHINKGGRPRQHLLSLTRRAQKHRLRELKLQVKA
FADKEEGGDVKSVCLTLFLLALRARNEHRQADELEAIMQGRGSDLQPAVCLAIRVNTFLS
CSQYHKMYRTVKAITGRQIFQPLHALRNAEKILLPGYHPFEWQPPLKNVSSNTDVGIIDG
LSGLSSSVDDYPVDTIAKRFRYDAALVSALMDMEEDILEGMRSQDLDDYLNGPFIVVVKE
SCDGMGDVSEKHGSGPAVPEKAVRFSFTIMKITIAHGSQNVKVFEEAKPNSELCCKPLCL
MLADESDHETLTAILSPLIAEREAMKSSELMLEMGGILRTFRFIFRGTGYDEKLVREVEG
LEASGSVYICTLCDATRLEASQNLVFHSITRSHAENLERYEVWRSNPYHESVEELRDRVK
GVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKNPNASKEERKRWQATLDKHL
RKKMNLKPIMRMNGNFARKLMTKETVEAVCELIPSEERHEALRELMDLYLKMKPVWRSSC
PAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWA
SEGNESGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNALKNSGFTMN
SKANVGDPLGIEDSLESQDSMEF
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggctgtctccttgccacccactttgggactcagttctgcacccgatgaaattcaacac
ccgcatattaagttttcagagtggaaatttaagctattcagggtgagatcctttgaaaag
acaacggaagaaactcaaaaggataaaaaagattcttctgagggaaaaccttctctggag
caatcgccagcagccatggacaagtctggtgaccagaagccagtcccgactcaatcagct
ctgaagggtccccctaagttttcaaagaaatcccatgatggtgggaaagcaagagacaaa
gcaatgcaccaagccaaccttcgacacttctgccgcatctgtgggaattattttaagacc
gatgagcacaacaggagatacccagtccacgggcccgtggatgctaaaacccaagtcctc
ttacgaaagaaggaaaagagagtcacttcctggccagacctcattgccagggttttccga
atcgatgtgaaggcagatgttgacacgatccaccccactgagttctgccataattgctgg
agcatcatgcacaggaagttcagcagtgccccatgtgaggtttacttcccaaggaatgca
accatggagtggcacccccatgcaccatcctgcgacatctgccacactgcccgccggggc
ctcaagaggaagagacctcagcccaatgtgcagctcagcaaaaaactcaaaactgtgctt
gaccgagcgagacaagcccgtcggcacaagagaagagctcaggcaaggatcagtagcaag
gaagtcatgaagaggatcaccaactgcagtaagatacatcttagtaccaagctcctggcg
gtggacttcccggcacactttgtgaaatctatctcctgccagatttgtgagcacattctg
gctgaccctgtggagaccagctgtaagcatgtattttgcaggatctgcattctcagatgc
ctcaaagtcatgggcagctattgtccctcttgccgatatccctgcttccccactgaccta
gagagtccagtgaagtcctttctgagcatcttgaattccctggtggtcaaatgtccagca
aaagagtgcaatgaggaggtcagcttggaaaaatataatcaccatgtctcaagccacaag
gaatcaaaagagaccttcgtgcatattaataaaggaggcagaccccgtcaacatcttctg
tcactcactcggagagctcagaagcaccggctgagggagctgaaactgcaagtcaaagct
tttgctgacaaagaagaaggtggagatgtgaagtctgtgtgcctgactttgttcctgctg
gccctgagggcaagaaatgagcacagacaagccgatgagctggaggccatcatgcaggga
cggggctctgatctgcagcctgctgtttgcttggccattcgtgtcaacaccttcctcagc
tgcagtcagtaccacaagatgtacaggactgtgaaagccatcacagggaggcagattttt
cagcctctgcacgcccttcgcaacgcagagaagatccttctgccaggttaccatcccttt
gagtggcagccacctctgaagaatgtgtcttccaacacggatgttggcattattgatggg
ctgtctggactttcctcctcggtggatgattacccagtagacaccattgcaaagaggttc
cgctatgatgcagctttggtgtctgccttgatggacatggaagaagacattttggaaggc
atgagatcccaagaccttgatgactacctgaatggtcccttcatcgtagtggtgaaggaa
tcttgtgatggaatgggagatgtgagcgagaagcatgggagtgggccggcagttccagaa
aaggcagttcgtttttcattcaccatcatgaaaattaccatagcccacggctcacagaat
gtgaaggtgttcgaggaggccaaacctaactctgagctgtgttgcaagccattgtgcctt
atgctggcagatgagtctgaccatgagacgctgaccgccatcctgagccctctcattgcc
gagagggaagccatgaagagcagtgaactaatgctggagatgggaggcatcctcaggacc
ttcaggttcatcttcaggggaactggatatgatgaaaagcttgtccgggaagtggaaggc
cttgaggcgtctggctcagtctacatttgtacactttgtgatgccacccgcttggaagcc
tctcaaaatcttgtcttccactccataaccagaagccatgctgagaatctggaacgctat
gaggtctggcgctccaacccgtaccacgagtccgtggaggaactgcgggatcgagtgaaa
ggggtctctgccaaaccttttattgagacagtgccttccatagatgcactccactgtgac
attggcaatgcggctgagttctacaagatcttccagctagagataggagaggtatataaa
aatcccaacgcctccaaagaggaaaggaaacgatggcaggccacactggacaagcatctc
cggaagaagatgaacctaaaaccaatcatgaggatgaatggcaactttgccaggaagctc
atgacgaaagagaccgttgaggcagtgtgcgaattaatcccttctgaggagcggcatgaa
gctctccgggagctaatggacctttacctgaagatgaaacccgtgtggcgctcctcatgc
cctgctaaagagtgcccagagtccctctgccagtatagtttcaattctcagcgttttgct
gagctcctttctaccaagttcaagtatagatatgagggcaagatcaccaactattttcac
aaaaccttggcacatgtgcctgaaattatcgagagggatggctctatcggggcatgggca
agtgagggaaatgaatctggcaataaactatttaggcgtttccggaaaatgaatgccagg
cagtccaagtgctatgaaatggaagatgtcctgaaacaccactggctgtatacttccaaa
tatctccagaagtttatgaatgctcataatgcattaaaaaactctgggtttaccatgaac
tcaaaggcaaatgtaggggacccattaggcatagaggactctctggaaagccaagattca
atggagttttaa
DBGET
integrated database retrieval system
