Sciurus carolinensis (gray squirrel): 124958314
Help
Entry
124958314 CDS
T08117
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03022
Basal transcription factors
ncar03420
Nucleotide excision repair
ncar05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124958314
09124 Replication and repair
03420 Nucleotide excision repair
124958314
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
124958314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124958314
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124958314
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124958314
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124958314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
GeBP-like_C
Motif
Other DBs
NCBI-GeneID:
124958314
NCBI-ProteinID:
XP_047372250
LinkDB
All DBs
Position
11:complement(59045038..59079788)
Genome browser
AA seq
548 aa
AA seq
DB search
MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK
AKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQE
DPVLFQLYKDLVVSQVISAEEFWANRLNVNATDSFSTSNHKQDVGISAAFLADVRPQTDG
CNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRLNTGSK
DLFAECAKIDEKGLKTMVSLGVKNPLLDLTALEDKPLDEGYGISSVPSTSNSKSIKENSN
AAIIKRFNHHSAMVLAAGLRKQEAQNEQNSEPSSMDRNFGDADSFQPAVKRAKLQESIEY
EDLGKNNSIKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEMEAYTPKLTQ
VLSSSAASSTITALSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFP
VNTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHSWQ
SRRLMKKT
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggcaacttcatctgaagaagttttactgattgtaaagaaagtacgtcaaaagaagcag
gatggagcgctatacctcatggcagaaagaattgcttgggcaccagaaggcaaagatagg
tttacaatcagccatatgtatgcagatattaaatgccagaaaatcagtccagaaggaaaa
gctaaaattcagcttcagctggtcctacatgcaggggacacaactaacttccatttttcc
aatgaaagcacagcagtgaaagagcgagatgcagtaaaggaccttcttcagcagctactg
cccaaattcaagaggaaagcaaacaaagaactggaagagaaaaacagaatgctgcaagaa
gatcctgttttgtttcaactttataaagaccttgttgtaagtcaagtgatcagcgctgag
gaattctgggccaatcgtttaaatgtgaatgcaacagatagtttttctacatccaatcat
aagcaggatgttggcatttctgcagcatttctggctgatgtccggccccagacagatggc
tgtaatggtttaagatataatttaacttctgatatcattgagtccatatttaggacctat
ccagcagtaaaaatgaaatatgcagaaaatgttccccataacatgacagaaaaggaattc
tggacacgttttttccagtctcattatttccatagggaccggctgaatacaggatcaaag
gatctctttgcagaatgtgccaaaatagatgaaaaaggtttaaaaacaatggtttcatta
ggagtgaaaaacccactacttgatttgacagctttggaagataaaccattagatgagggc
tatggcatttcctctgtgccgtctacttccaattccaaatccatcaaggagaatagtaat
gctgccatcatcaagaggtttaaccatcacagtgccatggttctggcagcaggtctcagg
aaacaagaagcacaaaatgaacagaatagtgagcccagcagcatggatcgaaatttcgga
gatgcagacagctttcagccagcagtcaaaagggcgaagttacaagaatccattgaatat
gaagacttgggaaaaaataattccataaaaacgattgcactaaacctcaagaagtcagat
aggtattatcatggtccaactccaattcaatcactacagtatgccacgagtcaggacatt
attaattcttttcaaagtattaggcaagaaatggaagcttatacacccaagttaactcag
gttctctcaagtagtgccgctagtagtaccatcacagcactgtcacctggaggagcactt
atgcagggaggaacacagcaagccataaaccagatggtgccaaatgatattcagtctgaa
ttgaaacatttgtatgtggctgttggagaacttctgcggcatttctggtcctgctttcct
gttaatacaccattcctagaagaaaaggtagtgaaaatgaaaagtaatttggaacgattc
caagttacaaagctctgcccattccaagaaaaaattcgaagacagtatttaagcacaaat
ttggtaagtcacatagaagagatgcttcaaacagcctacaacaagctgcactcgtggcag
tcacggcgcttgatgaagaagacgtga
DBGET
integrated database retrieval system
