Sciurus carolinensis (gray squirrel): 124958490
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Entry
124958490 CDS
T08117
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncar03000
]
124958490
Transcription factors [BR:
ncar03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
124958490
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
124958490
NCBI-ProteinID:
XP_047372502
EnsemblRapid:
ENSSCRG00010020791
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All DBs
Position
11:60578031..61134779
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AA seq
843 aa
AA seq
DB search
MSSKQATSPFACAADGEEAMTQDLTSREKEEGSDQHVASHLPLHPIMHNKPHSEELPTLV
NTIQQDADWDSVLSSQQRMESENNKICSLYSFRNTSTSPHKPDEGSRDREIMTSVTFGTP
ERRKGSLADVVDTLKQKKLEEMTRTEQEDSSCMEKLLSKDWKEKMERLNTSELLGEIKGT
PESLAEKERQLSTMITQLISLREQLLAAHDEQKKLAASQIEKQRQQMDLARQQQEQIARQ
QQQLLQQQHKINLLQQQIQQVQGHMPPLMIPIFPHDQRTLAAAAAAQQGFLFPPGITYKP
GDNYPVQFIPSTMAAAAASGLSPLQLQKGHVSHPQINPRLKGLSDRFGRNLDTFEHGGGH
SYNHKQIEQLYAAQLASMQVSPGAKMPSTPQPPNTAGAVSPTGIKNEKRGTSPVTQVKDE
AAAQPLNLSSRPKTAEPVKSPTSPTQSLFPASKTSPVNLPNKSGIPSPLGGSLGRGSSLG
KWKSQHQEETYELDILSSLNSPALFGDQDTVMKAIQEARKMREQIQREQQQQQPHGVDGK
LSSMNNMGLNNCRNEKERTRFENLGPQLTGKSNEDGKLGPGVIDLTRPEDAEGSKAMNGS
AAKLQQYYCWPTGGATVAEARVYRDARGRASSEPHIKRPMNAFMVWAKDERRKILQAFPD
MHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIVDGKKL
RIGEYKQLMRSRRQEMRQFFTVGQQPQIPITTGTGVVYPGAITMATTTPSPQMTSDCSST
SASPEPSLPVIQSTYGMKTDGGSLAGNEMINGEDEMEMYDDYEDDPKSDYSSENEAPEAV
SAN
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaagcaagccacctctccatttgcctgtgcagctgatggagaggaagcgatg
acccaggatttgacctcaagggaaaaggaagagggcagtgatcaacatgtggcctcccat
ctgcctctgcaccccataatgcacaacaaacctcattctgaggagctaccaacactcgtc
aataccattcaacaagatgctgattgggacagcgttctgtcatctcagcaaagaatggag
tcagagaataataaaatatgttccctatattccttccgaaatacctctacctcaccacat
aagcctgacgaagggagtcgggaccgcgagataatgaccagtgttacttttggaacccca
gaacgccgcaaagggagccttgccgatgtggtggacacactgaaacagaagaagcttgag
gaaatgactcggactgaacaagaggattcttcctgcatggaaaaactactttcaaaagat
tggaaggaaaaaatggaaagactaaataccagtgagcttcttggagaaattaaaggtaca
cctgagagcctggcagaaaaagaacggcagctctccaccatgattacccaactgatcagt
ttacgggagcagctcctggcagcgcatgatgaacagaaaaaactggcagcctcgcaaatt
gagaaacaacggcagcaaatggaccttgctcgccaacagcaagaacagattgcaagacaa
cagcagcaacttctgcaacagcagcacaaaattaatctcctgcagcaacagatccagcag
gttcagggtcacatgcctccgctcatgatcccaatttttccacatgaccagcggaccctg
gcagcagctgctgccgcccaacagggattcctcttcccccctggaataacatacaaacca
ggtgataactaccccgtacagttcattccatcaacaatggcagctgctgctgcttctgga
ctcagccctttacagctccagaagggtcatgtctctcacccacaaattaacccaaggcta
aagggcctaagtgaccgttttggcaggaatttggacacctttgaacatggtggtggccac
tcttacaaccacaaacagattgagcagctctatgccgctcagctggccagcatgcaggtg
tcacctggagcaaagatgccatcaactccacagccaccaaacacagcaggggcagtctca
cctactgggataaaaaatgaaaagagagggaccagccctgtaactcaagttaaggatgaa
gcagcagcacagccgctgaatctctcatcccgacccaagacagcagagcccgtgaagtcc
ccaacatctcccactcagagcctcttcccagccagcaaaaccagccctgtcaatctgcca
aacaaaagcggcatccccagcccccttggaggaagtttgggaagaggatcctctttaggt
aaatggaaaagtcaacaccaggaagagacttatgaattagatatcctgtccagtctcaac
tcccctgccctatttggggatcaggatacagtgatgaaagccattcaggaggctcggaag
atgagagagcagatccagcgggagcaacagcagcaacagccccatggcgttgatgggaaa
ctgtcttccatgaataatatgggacttaacaactgcaggaatgaaaaggaaagaacacgc
tttgagaatttggggccccagttaacaggaaaatcaaatgaagatggaaaactgggccca
ggtgtcatcgaccttactcggccagaagatgcggagggaagtaaagcaatgaatggctct
gcagctaaactacagcagtattattgttggccaacaggaggtgccactgtggctgaagca
cgagtctacagggatgcccggggccgtgccagcagtgagccacacatcaagcgaccaatg
aatgcattcatggtttgggcgaaggatgagaggagaaaaatccttcaggccttccctgac
atgcacaactccaacattagcaaaatcttaggatctcgctggaaatccatgtccaaccag
gagaagcaaccttattatgaagagcaggcccggctaagcaagatacacttagagaagtac
ccaaactataaatacaaaccccgacccaaacgcacctgcattgttgatggaaaaaagctc
cggatcggggagtataagcaactaatgaggtcccggagacaggagatgaggcagttcttt
acggtggggcaacagcctcagattccaatcaccacaggaacaggtgttgtgtatcctggt
gctattactatggcaactaccacaccgtcacctcagatgacatctgactgctctagcacc
tccgccagcccagagcccagcctcccagtcatccagagcacttatggtatgaagacagac
ggcggaagcctagctggaaacgaaatgattaatggagaggatgaaatggaaatgtatgac
gactatgaagatgaccccaaatcagactatagcagtgaaaacgaggccccggaggctgtc
agtgccaactga
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