Sciurus carolinensis (gray squirrel): 124958508
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Entry
124958508 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: calpain-1 catalytic subunit-like
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04141
Protein processing in endoplasmic reticulum
ncar04210
Apoptosis
ncar04217
Necroptosis
ncar04218
Cellular senescence
ncar04382
Cornified envelope formation
ncar05010
Alzheimer disease
ncar05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
124958508
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
124958508
04217 Necroptosis
124958508
04218 Cellular senescence
124958508
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
124958508
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
124958508
05022 Pathways of neurodegeneration - multiple diseases
124958508
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ncar01002
]
124958508
Enzymes [BR:
ncar01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
124958508
Peptidases and inhibitors [BR:
ncar01002
]
Cysteine peptidases
Family C2: calpain family
124958508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_1
EF-hand_6
EF-hand_7
EF-hand_8
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
124958508
NCBI-ProteinID:
XP_047372545
LinkDB
All DBs
Position
11:complement(10421399..10443471)
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AA seq
714 aa
AA seq
DB search
MAEEIITPVYCTGVSAQVQKQRAKELGLGRHENAIKYLGQDYEQLRARCLQSGALFRDEA
FPPVPQSLGYKELGPNSSKTYGIKWKRPTEMLSNPQFIVDGATRTDICQGALGDCWLLAA
IASLTLNDTLLHRVVPHGQSFQDGYAGIFHFQLWQFGEWVDVVVDDLLPTKDGKLVFVHS
AQGNEFWSALLEKAYAKVNGSYEALSGGSTSEGFEDFTGGVTEWYELRKAPSDLYQIILK
ALERGSLLGCSIDISSVLDMEAITFKKLVKGHAYSVTGAKQVNYRGQMVSLIRMRNPWGE
VEWTGAWSDGSSEWNNVDPYEREQLRIKMEDGEFWMSFRDFMREFTRLEICNLTPDALKS
RTIRNWNTTLYEGTWRRGSTAGGCRNYPATFWVNPQFKIRLEEVDDEDDYGSRESGCSFV
LALMQKHRRRERRFGRDMETIGFAVYEVPPELVGQPAVHLKRDFFLANSSRARSEQFINL
REVSTRFRLPPGEYVVVPSTFEPNKEGDFVLRFFSEKSAGTEELDDQIQANLPDEQVLSE
EEIDENFKALFRQLAGEDLEISVRELQTILNRIISKHKDLRTKGFSLESCRSMVNLMDRD
GNGKLGLVEFNILWNRIRNYLSIFRKFDLDKSGSMSAYEMRMAIESAGFKLNKKLYELII
TRYSEPDLAVDFDNFVCCLVRLETMFRFFKTLDTDLDGVVTFDLFKWLQLTMFA
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggagatcatcacacccgtgtactgcaccggggtgtcagcccaagtgcagaag
caacgggccaaggagctgggcctgggccgccatgagaacgccatcaaatacctgggccag
gattatgaacagctgcgggcccggtgcctgcagagtggggccctattccgagatgaggcc
ttccctccagtgccccaaagcctgggctacaaagaactagggcccaactcctccaagacc
tatggcatcaagtggaagcgtcccacggagatgctgtcaaacccccagttcatcgtggat
ggagccacccgcacagacatctgccagggagcactgggggactgttggcttctggctgcc
atcgcctccctcaccctcaatgacaccctcctgcaccgagtggttcctcatggccagagt
ttccaggatggctatgccggcatcttccatttccagctatggcaatttggggagtgggtg
gatgtggtcgtggatgacctgctgcccaccaaggacgggaagctggtgtttgtgcactct
gcccaaggcaacgagttctggagcgccctgctggagaaagcctatgccaaggtgaatggc
agctatgaggccctgtcggggggcagcacctccgagggctttgaggacttcacaggcggg
gtcaccgagtggtacgagctgcgcaaggcacccagtgacctctaccaaatcatcctcaag
gcgctggagcgaggctccctgctgggctgctccattgacatctccagtgtcctggacatg
gaggccatcacctttaagaagctggtgaagggccatgcgtactctgtgaccggggccaag
caggtgaactaccggggccagatggtgagcctgatccggatgcggaacccctggggcgag
gtggagtggaccggagcctggagtgacggatcctcagagtggaacaacgtggacccttat
gaacgggagcagctgcggatcaagatggaggacggggagttctggatgtcattccgagac
ttcatgcgtgagtttacccgcctggagatctgcaacctcacgcccgacgcgctcaagagc
aggacaatccgcaactggaacaccacactctacgaggggacctggcggcgggggagcact
gcggggggctgtcgcaactacccagccaccttctgggtgaacccccagttcaagatccgg
ctggaggaggtggacgacgaagatgactacggcagtcgcgagtcgggctgcagcttcgtg
ctggccctcatgcagaagcaccgccgccgggagcgccgcttcggccgggacatggagacc
atcggcttcgcagtctacgaggtgcctccggagctggtgggccagccggctgtgcacttg
aagcgcgacttcttcctggccaactcatctcgggcccgatcggagcagttcatcaacctg
cgggaggtcagcacccgcttccgcctgccgcccggggagtacgtggtggtgccatccacc
ttcgagcccaacaaggagggcgacttcgtgctgcgcttcttctccgagaagagtgctggg
acagaggagctggacgaccagatccaggccaacctccccgacgagcaagtgctctcggaa
gaggagatcgatgagaacttcaaggccctcttcagacagctggcaggggaggacctggag
atcagcgtcagagagctgcagaccatcctcaacaggatcattagcaaacacaaagacctg
cggaccaagggcttcagcctggagtcgtgccgcagcatggtgaacctcatggaccgggat
ggcaatgggaagctgggcctggtggagttcaatatcctgtggaaccgcatccggaactac
ctgtccatcttccggaagtttgacctggacaagtcgggcagcatgagtgcctacgagatg
cggatggccatcgagtccgcaggcttcaagctcaacaaaaagctgtacgaactcatcatc
acccgctattccgagcctgacctggccgtggactttgacaacttcgtgtgctgcctggtg
cgactggagaccatgttccggtttttcaaaactctggacacagatctggatggagtcgtg
acctttgacctgtttaagtggttacagctgaccatgtttgcatga
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