Sciurus carolinensis (gray squirrel): 124958539
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Entry
124958539 CDS
T08117
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124958539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124958539
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
124958539
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
NRDE-2
TPR_16
TPR_19
TPR_6
Motif
Other DBs
NCBI-GeneID:
124958539
NCBI-ProteinID:
XP_047372628
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All DBs
Position
11:44596454..44669695
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AA seq
717 aa
AA seq
DB search
MSGDGATEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQY
LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH
SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEY
YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK
SGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYKFMDLYPCSASE
LKALGYKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPP
GLHPVPGGVFPVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVRIIT
GGAPELAVEGNGPVESNAVLTKAVKRPNEDSDEDEEKGAVVPPVHDIYRARQQKRIR
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggagacggagccacggagcaggcagctgagtatgtcccagagaaggtgaagaaa
gcggaaaagaaattagaagagaatccatatgaccttgatgcttggagcattctcattcga
gaggcacagaatcaacctatagacaaagcacggaagacttatgaacgccttgttgcccag
ttcccaagttctggcagattctggaaactgtacattgaagcagagattaaagctaaaaat
tacgacaaggttgaaaagctatttcagagatgccttatgaaggttttgcacattgattta
tggaaatgttatctttcatatgtccgagaaaccaagggtaaactacccagttacaaagaa
aaaatggctcaagcttacgactttgcactggataaaattggaatggaaattatgtcctat
cagatttgggtagattacatcaattttttaaaaggcgtggaagctgttggatcttatgca
gaaaatcagagaataacagctgttcgaagagtttatcaacgaggttgtgttaatccaatg
atcaacattgaacaactctggagagactataataagtacgaagagggtatcaatattcac
ttagctaaaaaaatgattgaagatcggagtagagactacatgaatgctaggcgagtggca
aaggaatatgagacagtaatgaaaggcttggaccgcaatgccccttcagtgcctcctcag
aatactcctcaagaagctcagcaagtagatatgtggaagaagtatatacagtgggaaaag
agcaaccctcttcgtacagaggatcagactcttataacaaaaagagtaatgtttgcttat
gaacagtgcctgctggtcctgggccatcaccctgatatttggtatgaagctgcccagtat
cttgaacagtcaagtaaactgctcgcagagaagggagacatgaataatgccaaactattt
agtgatgaagctgctaatatatatgaaagagccataagcactttattaaagaaaaatatg
cttctttattttgcatatgcagattatgaagaaagtcgcatgaagtatgagaaggttcac
agtatatacaacagacttctggcaattgaggatattgaccccaccttggtatatatccaa
tatatgaaatttgcaaggagagcagaaggtatcaaatctggacgaatgatatttaaaaaa
gcaagagaagataccagaacccgccaccatgtctatgttactgcagcactcatggagtat
tactgtagtaaggataaatctgttgcctttaagatttttgagctgggactaaagaaatac
ggagacatcccagaatatgtcctggcctatattgactatctctctcacctcaatgaggac
aataatacccgagttttgtttgaacgagttttaacatctggaagccttcctccggagaag
tctggagaaatctgggcccggtttctagcttttgaaagtaatattggtgatcttgccagt
atactcaaagtggaaaaaagacggtttacagcattcaaagaagagtacgaaggcaaagaa
actgctttgctggtggacagatataagttcatggatctgtatccttgctctgcaagtgaa
ctaaaagcactaggttataaggatgtctcccgtgctaagctagcagctataattccagac
ccagttgtagctccttctatagtgcctgttctgaaagatgaagtggatagaaaaccagaa
taccctaaaccagacacccagcagatgattccatttcagccacggcatttagcacctcca
ggtttacaccctgtccctggtggagtgttcccggtgccccctgcagctgtcgttttgatg
aaacttctccctcctcctatctgtttccagggtccttttgtacaagtggatgaactgatg
gaaattttccgaagatgcaagataccaaatactgttgaggaagccgtgaggatcattacg
ggcggggccccagagctggctgtggaaggcaatggcccagtggaaagtaacgcagtactc
accaaggctgtcaaaaggcccaacgaggattcagatgaagatgaagaaaagggagctgtt
gttccccctgtccatgacatttacagagcgcggcagcagaagcgaattcgatga
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