Sciurus carolinensis (gray squirrel): 124958544
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Entry
124958544 CDS
T08117
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124958544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncar03021
]
124958544
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124958544
Transcription machinery [BR:
ncar03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124958544
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
124958544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
124958544
NCBI-ProteinID:
XP_047372638
LinkDB
All DBs
Position
11:85170050..85195259
Genome browser
AA seq
1685 aa
AA seq
DB search
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVSQIPPMTVKAPHQVPVQPEKTRPCPSLQIQDLKGTNRDPRLN
RMGQHSSHGKDQSHRKEFLMNTLNQSDTKTSKTVPSEKLNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQESESVRLSDINKRDPRLKKHLQEKTDGKDDDV
KEKRKTVEKKDKEEHVKSSEHRLIGSRNKIINGIVQKQDTITEELEKQGIKPGRSSNRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSISPTSTPKAGKIRQSGIKQSHMEEFTPPSR
EERNAKRSTKQDVRDPRRMKKTEEERPQETANQHSTKSGSEPKENIENWQSSKSTKRWKS
GWEENKSLQQGDEHSKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEISQDEFLVVVHQIRQLFQYQEGKHRCSVRDSPTEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKMI
FEGPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPMRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPMGGL
RFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQ
QGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFE
GPVPGGGLRIEGPLGQGGPRFEGHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPG
PQRFDGPPGQQVQPRFDGIPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQ
TGPYNDPPGSAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFTNPLNRASGHYFD
EKNLQSSQFGNFGNLPAPLSVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQN
PSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPPPEEEEDQN
EDQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNR
TEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQ
SVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDC
TPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEERIDTPPSCTEESIATPTEIKTEND
TVESV
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggcggaggccggtgctgcgggggcccgggaggacgcctgtcgg
gattatcagtcatcgctcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagaatatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccctggatgtcagagtcaattca
ttagatcctgcgtggcctattaagcctctaccccccaatgtgaatacatctagcatccat
gtgaatcccaaatttttaaataaatcgcctgaggagccttcaacacctggcacagtggtc
agttcccccagcatctccactcctccaattgttcctgatatacaaaagaatcttactcaa
gaacaactaatacggcagcagttactggcaaagcaaaaacagttgttagaacttcagcag
aaaaagctggaacttgagttagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggagacatccaacttgggtcctggatcagcaccatcgaaattacatgtttcacag
attccccctatgacagttaaagccccccatcaggttcctgtgcaacctgagaaaacccgt
ccatgtccatccttacaaattcaggatttgaaaggaacaaaccgggatccccgtcttaat
aggatgggccaacattcttctcacggaaaagatcagagtcacaggaaggaattccttatg
aatacattgaaccagtctgatactaagacaagtaaaactgtaccctctgaaaaactaaat
tcatccaagcaagaaaaaagtaaatcaggtgaaaaaataaccaagaaagaacttgaccaa
ttagattctaaatctaaatctaaatctaaatcaccatcgcctttgaaaaacaaattatct
cacacgaaagacttgaaaaatcaagaatctgaaagtgtgagattgtcggatataaacaag
agagatccaagattaaaaaaacatcttcaggagaagactgatggcaaagatgatgacgtg
aaagagaagagaaaaacagtagaaaaaaaggataaagaggagcacgtgaaatcatctgaa
cacagactgattggaagtagaaataaaataataaatggcattgtacagaaacaggataca
ataacagaagaattggaaaaacaggggataaaaccagggagatcgagtaatagaaagcga
tcaagatcgagatcacccaagtctcggtcaccaattatacattccccaaagagaagagat
aggcggtcacccaaacgaaggcagagaagtatttctccaacttcgacgcccaaagctgga
aagattcgtcaatctggaattaagcagtcacatatggaagagtttacaccaccttccagg
gaagaaagaaatgctaagagaagtactaaacaggatgttcgagatccaaggcgaatgaaa
aagactgaagaggaacgaccccaagaaactgcaaatcaacattctacaaagtcaggctct
gagccaaaggagaatatagaaaactggcaaagttctaagtctaccaaaagatggaaatct
ggttgggaagaaaataaaagtttacaacagggcgatgaacatagtaaatctcctcatcta
aggcacagggagagctggtcaagcactaaaggaatcttgtcacctcgagccccaaagcag
cagcatcgattaagtgtagatgcgaatcttcagattcctaaagagttaacccttgcaagc
aaaagagaattgcttcaaaagacgagtgaacgtttagcatctggtgaaatttcacaggat
gagttccttgttgttgtgcatcaaattcgacagctttttcagtatcaagaaggtaaacat
agatgcagtgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtgcgagaagagcagagatctccattcaatgat
cgttttccacttaagcgacctagatatgaagattcagataaaccatttgtagatagcccg
gcatcaagatttgctggccttgatacaaatcaacgacttactgctttagctgaagacaga
ccattatttgatggacctagtaggccatcagtaacaagagatggcccaaccaagatgatt
tttgaaggacctaataaattaagccctagaattgatggacctcctacaccaggttctctt
cggtttgatgggtcaccaggacaaatggggggaggaggccctatgagatttgaaggacca
caaggtcagctaggaggtgggtgtcctttgagatttgaaggtcctccaggaccagtaggg
acacctctgaggtttgaggggccaattggtcaagcaggaggaggtggttttcggtttgaa
ggttcccctggtctgaggtttgagggatctgcaggaggtttgcgatttgaaggaccaggg
ggtcagcctgtgggtggtcttagatttgaaggacatcgtggtcaacctatgggtggtctg
aggtttgagggacctcatggtcagcctgtgggtggtcttagatttgataatcctcgaggt
caacctgtaggtggacttagatttgaggggggtcacggtccatcaggggctgccattagg
tttgatggacctcatggtcagccaggaggtgggatcagatttgaggggcctttgctacag
caaggagttggaatgaggtttgagggcccccatggtcagtcagtagctggtctgagattt
gaaggacaacataatcaacttggtggaaacctcaggtttgagggtccacatggtcagcca
ggggttgggatcaggtttgaaggacctttagtccagcaaggtggtggaatgaggtttgag
ggtcctgtaccaggaggtggcctgagaattgaggggcctctgggtcaaggtggtccaagg
tttgaaggtcatgctttaaggtttgatgggcagccaggtcagccatcactcttgccaaga
tttgatggattacatggtcagccaggtcctagatttgaaagaactcctggtcagccaggc
ccacagaggtttgatggaccacctggacagcaggttcaaccaagatttgatggtatacct
caaagatttgatggtccacaacaccagcaagcatcaaggtttgatattcctctcggtctg
caaggcacacgatttgacaatcatccttcacaaaggcttgaatcggtatctttcaatcag
actggtccatataatgatccacctggcagtgcttttaatgccccatcccaaggactacag
ttccaaagacatgaacaaatatttgattcacctcaaggaccaaattttaatggaccacat
ggccctggaaaccagagtttcacaaatccccttaacagagcttctggacactattttgat
gaaaagaatcttcagagttctcaatttggaaactttggcaatctacctgctcctttatca
gtaggaaatattcaggcatctcaacaggttcttactggtgttgctcagccagtagcattt
ggccaaggacaacagtttttgccagttcatccacaaaatcctggagcatttgttcagaat
ccttcaggtgctcttcctaaggcatatcctgataatcatcttagtcaggtggatgtaaat
gaattattttcaaaactgctaaaaacaggaattctcaaattgtcccagcctgattcagct
acaacacaagtaaatgaagttgctgctcagcctccccctgaagaggaggaagatcaaaat
gaagatcaagatgttccagatcttactaattttacaattgaagaattgaaacaacgttat
gatagtgttataaaccgactatacactggtattcagtgttactcttgtggaatgagattt
acaacatcacagacagatgtatatgcagatcacttggactggcactatcggcaaaataga
actgagaaggacgttagccgaaaagtcactcatagacgttggtactacagtttaacagac
tggatagaatttgaggaaatagctgatctggaagaacgtgcaaagagccagttttttgaa
aaggtgcatgaagaagttgtgctcaaaactcaggaggctgctaaagaaaaggagtttcaa
agtgtacctgctggaccagctggagcagttgagagttgtgaaatctgtcaagaacagttt
gagcaatactgggatgaagaggaagaggaatggcacttaaaaaatgctattagagtagat
ggaaagatatatcatccatcatgttatgaagattatcaaaatacatcttcatttgattgt
acaccatctcccagcaagacaccagttgaaaaccctttgaacattatgttgaacattgtc
aaaaatgaattgcaggaaccttgtgaaagtcccaaagttaaggaagagcgaattgatact
ccaccatcttgtacagaggaaagcatagcaacacctactgaaattaaaacagaaaatgat
acagtcgagtcagtttaa
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integrated database retrieval system
