Sciurus carolinensis (gray squirrel): 124958550
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Entry
124958550 CDS
T08117
Name
(RefSeq) low-density lipoprotein receptor-related protein 4
KO
K20051
low-density lipoprotein receptor-related protein 4
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124958550
Membrane trafficking [BR:
ncar04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
124958550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
Ldl_recept_a
FXa_inhibition
Vgb_lyase
SGL
cEGF
EGF_LRP2
EGF_CA
EGF_3
Motif
Other DBs
NCBI-GeneID:
124958550
NCBI-ProteinID:
XP_047372654
LinkDB
All DBs
Position
11:32539930..32587649
Genome browser
AA seq
1809 aa
AA seq
DB search
MRRPWGALLVGALLCAHGLASSPECACGRSHFTCAVSALGECTCIPAQWQCDGDNDCGDH
SDEDGCMLPTCSPLDFHCDNGKCIRRSWVCDGDNDCEDDSDEQDCPPRECEEDEFPCQNG
YCIRSLWHCDGDNDCGDNSDEQCDMRKCSDKEFRCSDGSCIAEHWYCDGDTDCKDGSDEE
SCPSAVPAPPCNLEEFQCAYGRCILDIYHCDGDDDCGDWSDESDCSSHQPCRSGEFMCDS
GLCINAGWRCDGDADCDDQSDERNCTTSMCTAEQFRCRSGRCVRLSWRCDGEDDCADNSD
EENCENTGSPQCASDQFLCWNGRCIGQRKLCNGVNDCGDNSDESPQQNCRPRTGEENCSV
NNGGCSQKCQMVRGAVQCTCHTGYRLTEDGRTCHDVNECAEEGYCSQGCTNSEGAFQCWC
EAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRE
LVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL
DGAHRKVLLWQNLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWP
NGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHT
KSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSAQNY
TCACPTGFRKISSHACAQSLDKFLLFARRMDIRRISFDTEDLSDDVIPLADVRSAVALDW
DSRDDHVYWTDVSTDTISRAKWDGTGQEVVVDTSLESPAGLAIDWVTNKLYWTDAGTDRI
EVANTDGSMRTVLIWENLDRPRDIVVEPMGGYMYWTDWGASPKIERAGMDASSRQVIISS
NLTWPNGLAIDYGSQRLYWADAGMKTIEFAGLDGSNRKVLIGSQLPHPFGLTLYGERIYW
TDWQTKSIQSADRLTGLHRETLQENLENLMDIHVFHRRRPPVTTPCAMENGGCSHLCLRS
PNPSGFSCTCPTGINLLPDGKTCSPGMNSFLIFARRIDVRMVSLDIPYFADVVVPINITM
KNTIAIGVDPQEGKVYWSDSTLHRISRASLDGSQHEDIITTGLQTTDGLAVDAIGRKVYW
TDTGTNRIEVGNLDGSMRKVLVWQNLDSPRAIVLYHEMGFMYWTDWGENAKLERSGMDGS
DRTVLINNNLGWPNGLTVDKVSSQLLWADAHTERIEVADLNGANRHTLVSPVQHPYGLTL
LGSYIYWTDWQTRSIHRADKGTGSNIILVRSNLPGLMDIQAVDRMQPLGFNKCGSRNGGC
SHLCLPRPSGFSCACPTGIQLKGDGKTCDPSPETYLLFSSRGSIRRISLDTSDHTDVHVP
VPELNNVISLDYDSVDGKVYYTDVFLDVIRRADLNGNNMETVIGRGLKTTDGLAVDWVAR
NLYWTDTGRNTIEASRLDGSCRKVLINNSLDEPRAIAVFPRKGYLFWTDWGHIAKIERAN
LDGSDRKVLINTDLGWPNGLTLDYDTRRIYWVDAHLDRIESADLNGKLRQVLVSHVSHPF
ALTQQDRWIYWTDWQTKSIQRVDKYSGRNKETVLANVEGLMDIIVVSPQRQTGTNACGVN
NGGCTHLCFARASDFVCACPDEPDSRPCSLVPGLVPPAPKATSISEKSPVLPNTLPTTLH
SSTTRTHTSLEEVEGRCSERDARLGLCAHSNEAIPAVPGEGLHISYAIGGLLSILLILVV
IAALMLYRHKKSKFTDPGMGNLTYSNPSYRTSTQEVKIEAIPKPAMYNQLCYKKEQLFHP
SDSLSPFLF
NT seq
5430 nt
NT seq
+upstream
nt +downstream
nt
atgaggcggccgtggggcgcgctgctggttggcgctctgctctgtgcacacggcctggcc
agcagccctgagtgtgcttgtgggagaagccacttcacttgtgcagtgagtgccctcggc
gagtgtacctgcattcctgcccagtggcagtgtgatggggacaatgactgtggggaccac
agtgatgaggacgggtgtatgctgcccacctgttcccctttggatttccactgtgacaat
ggcaagtgcatccgccgctcctgggtgtgcgatggggacaatgactgtgaagatgattct
gatgagcaggattgtccccctcgagagtgtgaggaggatgagttcccctgccagaatggc
tactgtatccggagcctgtggcactgtgatggtgacaatgactgcggtgacaacagcgat
gagcagtgtgacatgcgcaagtgctctgacaaggaattccgctgcagcgacgggagctgc
attgctgagcactggtactgcgatggtgacacagactgcaaagacggctcggacgaggag
agctgtccctcggcagtgccagcgcccccctgcaacctggaggagttccagtgtgcctac
ggccgctgcatcctggacatctaccactgtgatggcgacgatgactgtggggactggtca
gacgagtctgactgctcttcccaccagccctgccgctctggggagttcatgtgtgacagt
ggcctgtgcatcaatgcaggctggcgctgtgatggtgacgcggactgtgatgaccagtct
gatgagcgcaactgcaccacctccatgtgtacggcggaacagttccgctgtcggtcaggc
cgctgcgtccgcctgtcctggcgctgtgatggggaggacgattgtgcggacaacagcgat
gaagagaactgtgagaacacaggaagcccccaatgtgcctccgaccagttcctgtgttgg
aatgggcgctgcattgggcagaggaagctgtgtaacggggtcaatgactgtggtgacaac
agtgacgagagcccacagcagaactgccggccccggacgggtgaggagaactgcagtgtt
aacaacggtggctgctcccagaagtgccagatggtgcggggggcagtgcagtgtacctgc
cacacaggctaccggctcacagaggatgggcgcacatgccatgatgtgaatgaatgtgct
gaggaggggtactgtagccaaggatgcaccaacagtgaaggggctttccagtgctggtgt
gaagcaggctatgaactacggccggaccggcgcagctgcaaggctctggggccagaacct
gtgctgctgttcgccaatcgcatcgacatccggcaggtgctgccgcaccgctctgagtac
acgctgctgctcaacaacctggagaacgccattgccctcgacttccatcaccgacgtgag
ctggtcttctggtccgatgtcaccctggaccggatcctccgagccaacctcaatggcagc
aatgtggaagaagttgtgtccacgggactagagagcccagggggtctggctgtggattgg
gtccatgacaaactttactggactgactcagggacatcaaggatcgaggtggccaacttg
gatggggctcaccgaaaggtgctactgtggcagaaccttgagaagccccgggccattgcc
ttgcaccccatggagggtaccatttactggacagactggggcaacacccctcgcattgag
gcctccagcatggatggctctggacgacgcatcattgcggatacccatctcttctggccc
aatggcctcaccattgactatgctgggcgccgtatgtactgggtggatgctaaacaccac
gtcattgagagggccaacctggatgggagtcatcgcaaggctgtcatcagccagggcctc
cctcatcccttcgccatcacagtgtttgaagacagcctgtactggacagactggcacacc
aaaagcatcaatagtgctaataagtttactgggaagaaccaggaaatcattcgtaacaag
ctgcacttccccatggacattcataccttgcacccccaacgccagcctgcagggaaaaac
cgctgtggagacaacaatggaggctgcacccacctgtgtcttcccagtgcccagaactac
acctgtgcctgccccactggcttccgcaaaatcagcagccacgcctgtgcccagagtctt
gacaagttcctgctttttgcccgaaggatggacatccgtcggatcagctttgacacagag
gacctttccgatgatgtcatcccactggctgacgtgcgcagtgctgtggcccttgactgg
gactcccgggatgaccatgtgtactggacagatgtcagcactgataccatcagcagggcc
aagtgggatggaacaggacaggaggtggtagtggataccagtttggagagccctgcaggc
ctggcgattgattgggtcaccaacaagctatattggacagatgcaggtacagaccgtatt
gaagtagccaacacagatggcagcatgaggacagtactcatctgggagaaccttgatcgt
cctcgggacatcgtggtggaacccatgggcgggtacatgtattggactgactggggtgca
agtcctaagattgaacgagctggcatggatgcctccagccgccaagtcatcatctcttct
aatctgacctggcctaatggattagctattgactatgggtcccagaggctatactgggct
gatgctggcatgaagacgattgaatttgctggactggatggcagcaataggaaggtgctg
atcggaagccagctcccccacccttttgggctgactctctatggagagcgcatctattgg
actgactggcagaccaagagtatacagagtgccgaccgactgactgggctgcaccgggag
accctacaggaaaacctggagaatctcatggatatccatgtcttccaccgcaggcggcct
ccagtgaccacaccatgtgctatggagaatggaggctgcagccacctgtgtcttcggtcc
ccaaatccaagtggcttcagctgtacttgccctacaggcatcaacctgcttcctgatggc
aagacctgttcaccagggatgaacagtttcctcatcttcgccaggaggatagatgtacgc
atggtctccttagacatcccttattttgctgatgtggtggtgccaatcaacattaccatg
aagaacaccattgccattggagtagacccccaggaaggaaaagtatactggtctgacagc
acactgcaccggatcagccgtgccagtctggatggctcacagcacgaggacatcatcacc
acagggctgcagaccacagatgggcttgcagtggatgccattggccggaaagtgtactgg
acagatacaggaacaaacaggattgaagtgggcaacctggacgggtccatgcggaaagtg
ttggtgtggcagaaccttgacagtccccgggccattgttctataccatgagatggggttc
atgtactggacagactggggggagaatgccaagttagagcggtctggaatggatggctca
gatcgtactgtgctcattaacaacaacctaggatggcccaatggactgaccgtggacaag
gtcagctcccaactgctatgggctgatgcccacactgagagaattgaggttgctgaccta
aatggtgccaatcggcatacgttggtgtcaccagtgcagcacccctatggcctcacactt
cttggctcctatatctactggactgattggcagacccgtagcatccaccgtgctgacaag
ggtactggcagcaatatcatcctggtgaggtccaatctgccaggcctcatggacatccag
gctgtggaccggatgcaaccactgggttttaacaagtgtggttcgagaaatggcggatgc
tctcatctctgcttgcctcggccttctggcttctcctgtgcctgccccacaggcatccag
ctgaagggtgatgggaagacctgtgacccctctcctgagacctacctgctcttctccagc
cgaggctccatccggcgtatctcactggacaccagtgaccacacagatgtgcacgtccct
gttcctgagctcaacaatgtcatctccctggactatgacagtgtagatgggaaggtgtat
tacacagatgtgtttctggatgttatcaggcgagcagacctgaatggcaacaacatggag
acagtgattgggcgtgggctgaagaccactgatgggctggcagtggactgggtggccagg
aacctgtattggacagatacaggccgaaataccatcgaggcatcaaggctggatggttct
tgccgcaaagtgctgatcaacaacagcttggatgaacctcgggccattgctgttttcccc
aggaaggggtacctcttctggacagactggggccacattgccaagattgaacgggcaaat
ctggatggttccgaccggaaggtcctcatcaacacagacctgggttggcccaatggccta
accttggactatgatacccgcaggatctactgggtagatgcacatttggaccggattgag
agcgctgacctcaacgggaagctgcggcaggtcttggtcagccatgtgtcccatcccttt
gccctcacacagcaggacaggtggatctattggacagactggcagaccaagtccatccaa
cgtgttgacaagtactcaggccgcaacaaggagacagtgttggcaaatgtggagggactc
atggatatcatcgtggtttcccctcaacggcagacagggaccaatgcctgtggtgtgaac
aatggcggctgtacccacctctgctttgccagagcctcagactttgtgtgtgcctgtccc
gatgagcctgatagccggccctgctcccttgtgcctggcctggtgcccccagctcccaag
gctaccagcataagtgagaagagcccagtgctgcctaacacactgcccaccaccttgcat
tcttctaccaccaggacccacacatctctggaggaagtggaaggcagatgctctgaaagg
gatgcccgactaggcctgtgtgcacattccaatgaggccatacctgctgttccaggtgaa
ggacttcacattagttatgccattggtggactcctcagtattttgctgattttggtggtg
attgcagctctgatgctatacagacacaaaaaatccaagttcactgatcctggaatgggg
aacctgacctacagcaacccctcttaccgaacttctactcaggaagtgaaaattgaagca
atccccaaaccagccatgtacaatcaactatgctataagaaagagcagctctttcacccc
tcagatagcctttcaccctttctcttctga
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integrated database retrieval system
