Sciurus carolinensis (gray squirrel): 124958689 Help Entry 124958689         CDS       T08117                                  Name (RefSeq) pre-mRNA-processing factor 19   KO K10599   pre-mRNA-processing factor 19 [EC:2.3.2.27] Organism ncar  Sciurus carolinensis (gray squirrel) Pathway ncar03040   Spliceosome ncar04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:ncar00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     124958689   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     124958689  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:ncar03041]     124958689    04121 Ubiquitin system [BR:ncar04121]     124958689    03400 DNA repair and recombination proteins [BR:ncar03400]     124958689 Enzymes [BR:ncar01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      124958689 Spliceosome [BR:ncar03041]  Complex B   Other components    Prp19 complex     124958689  Complex C    Prp19-CDC5 complex     124958689 Ubiquitin system [BR:ncar04121]  Ubiquitin ligases (E3)   U-box type E3    124958689 DNA repair and recombination proteins [BR:ncar03400]  Eukaryotic type   Other factors with a suspected DNA repair function    PSO4 complex     124958689 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Prp19 Beta-prop_EML_2 WDR55 Beta-prop_WDR90_POC16_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_WDR75_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_TEP1_C NBCH_WD40 Beta-prop_HPS5 WDR90_beta-prop_4th Beta-prop_IFT122_1st U-box PEP5_VPS11_N Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_RIG_2nd Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_SPT8 PROPPIN Beta-prop_Nup120_160 eIF2A Cytochrom_D1 RMC1_N Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N Ge1_WD40 zf-Nse Beta-prop_LRRK2 DUF1830 ATG16 Cep57_MT_bd Motif Other DBs NCBI-GeneID:  124958689 NCBI-ProteinID:  XP_047372985 LinkDB All DBs Position 11:13980338..13990265 Genome browser AA seq 504 aa AA seqDB search MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHP IRPKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL TKEVTAAREALATLKPQAGLIVPQTVPSSQPSVVGSGEPMDLGELVGMTPEIIQKLQDKA TVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTG GADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVPNTSCVQ VVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVLTKVTDETSGCSLTCAQFHP DGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWD LRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEILHFTEHSGLTTG VAFGHHAKFIASTGMDRSLKFYSL NT seq 1515 nt NT seq  +upstreamnt  +downstreamnt atgtccctgatctgctctatctccaatgaagtgccagagcacccatgtgtgtcccctgtc tctaatcatgtgtatgagcggcggctcattgagaagtacattgcagaaaatggtacagat ccgatcaacaaccagcctctctcagaggagcagctcatcgacatcaaagttgctcaccca atccgtcccaagccaccctcggccaccagcatcccagccattctgaaagccttacaagat gagtgggatgcggtcatgctgcacagcttcactctgcgccagcagctgcagacaacccgc caggagttgtcccatgctctgtaccagcatgatgctgcctgccgtgtcattgcccgtctc accaaggaagtcactgctgcccgagaagctctggctaccctgaaaccacaggctggtctc atcgtgccccagactgtgccaagctcacagccaagtgttgtgggttcaggtgagcccatg gatttgggcgagctggtgggaatgacccctgagattatccagaagctgcaagacaaggcc actgtgctgaccacggagcgtaagaagagaggaaaaactgtgcctgaggagctggtgaaa ccggaagagctcagcaaataccggcaggtggcttcccatgtgggattgcacagtgccagt attcccgggattcttgccctggacctctgtccctctgacaccaacaagatcctcactggt ggggcagataagaatgttgttgtttttgataagagttctgagcaaatcctggccaccctc aaaggccacaccaagaaggtcaccagtgtggtgtttcacccttcccaggacctggtgttt tctgcttccccagatgccaccatcaggatttggtctgtcccgaacacctcttgtgtacag gttgttcgggcccatgaaagtgctgtgacgggcctcagcctccatgccactggtgactat ctcctgagctcctctgatgaccagtactgggccttctctgacatccagacggggcgtgtg ctcaccaaggtgacagatgagacctctggctgctctctcacctgtgcgcagttccaccct gatgggctcatttttggaacaggaaccatggactctcagattaagatttgggacttgaag gagcgcaccaatgtggccaatttccctggccactcgggccccatcaccagcatcgccttc tctgagaacgggtactacctggccacggcagccgacgactcctctgtcaagctgtgggac ctgcgcaagctgaagaacttcaagacgttgcagcttgataacaactttgaggtgaagtca ctgatctttgaccagagcggcacctacctggcccttgggggcacagatgtccagatctac atctgtaaacaatggacagagattcttcactttacagaacacagtggcctgactacaggg gtggcctttgggcaccacgccaagttcatcgcttcaactggcatggataggagcctcaag ttctacagcctgtag

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