Sciurus carolinensis (gray squirrel): 124958721
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Entry
124958721 CDS
T08117
Name
(RefSeq) interferon regulatory factor 7-like isoform X1
KO
K09447
interferon regulatory factor 7
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04620
Toll-like receptor signaling pathway
ncar04621
NOD-like receptor signaling pathway
ncar04622
RIG-I-like receptor signaling pathway
ncar04623
Cytosolic DNA-sensing pathway
ncar05160
Hepatitis C
ncar05161
Hepatitis B
ncar05162
Measles
ncar05164
Influenza A
ncar05167
Kaposi sarcoma-associated herpesvirus infection
ncar05168
Herpes simplex virus 1 infection
ncar05169
Epstein-Barr virus infection
ncar05203
Viral carcinogenesis
ncar05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
124958721
04621 NOD-like receptor signaling pathway
124958721
04622 RIG-I-like receptor signaling pathway
124958721
04623 Cytosolic DNA-sensing pathway
124958721
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
124958721
09172 Infectious disease: viral
05161 Hepatitis B
124958721
05160 Hepatitis C
124958721
05164 Influenza A
124958721
05162 Measles
124958721
05168 Herpes simplex virus 1 infection
124958721
05167 Kaposi sarcoma-associated herpesvirus infection
124958721
05169 Epstein-Barr virus infection
124958721
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
124958721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncar03000
]
124958721
Transcription factors [BR:
ncar03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
124958721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
124958721
NCBI-ProteinID:
XP_047373043
LinkDB
All DBs
Position
11:complement(501565..504971)
Genome browser
AA seq
501 aa
AA seq
DB search
MAVATQRGVQRVLFAEWLLGEVSSGCYEGLRWLDATHTVFRVPWKHFARKDLAEADARIF
KAWAVARGRWPPNNSGGNQPSPEAEAAERAGWKTNFRCALRSTRLFLMLQDNSGDPVDPH
KVYALNPELGWRASGPTGPLPSEGPAIYQGEEEALEGALPRQGGPLGPFLAGDTKLQAPS
PLPTLAGDTGDPLLQVLQQSFLGDHLLEDTWPVDPAPLESPGPEHVSEEPSSAWAVEAVP
SPRPQCPGLMTDAGQGRAPTPLHEEEPGTAPFPSTCTPMGDPIQGALDVTIMYKGRTVLQ
AVVGHPSCVFLYGPPGPAIRASEPQQVVFPSPAELPDQKQLHYTEKLLQHVTPGLQLELR
GLALWARRMGKCKVYWEVGSPLGSANPSSPAQLLERNCNTPIFDFNTFFRELGEFRTRRR
QGSPHYTIYLGFGQDLSAGRPKEKSLVLVKLEPWLCRVYLEGVQREGVSSLDSGSLSLSL
SSTSSLYDDIEHFLMELQQPA
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggctgtagctactcagaggggggtccagcgtgttctgtttgcagagtggcttctggga
gaggtcagcagcggctgctatgaggggctgcggtggctggacgccacccacacggtcttc
cgcgtgccctggaagcacttcgctcgcaaggacctagcagaggcagatgctcgcatcttc
aaggcctgggcggtggcccgaggcaggtggccacccaacaacagcggaggcaaccagccg
tccccagaggctgaggccgcagagcgtgcaggctggaaaaccaacttccgctgcgcgctg
cgcagcacgcgtctcttcctgatgctgcaggacaactcaggggaccctgtggacccacac
aaggtgtatgcgctcaaccctgagctggggtggagagcctcaggtccaactggccccctt
ccctcagaaggtccagctatctaccagggggaagaagaggctctcgaaggtgccctgccc
agacagggtgggcccctaggaccattcctggcaggagacactaagctgcaagccccaagc
cctctacccaccctggcaggtgacacaggggaccccttgctccaggttcttcagcagagc
ttcctgggggaccacctgttggaggatacctggccggtagatccagcccctctggagtct
cctggaccagagcacgtttcagaggagccttcctcagcatgggctgtggaagctgtcccc
agccccaggcctcaatgtccaggccttatgacagatgcaggccagggtagggccccgacg
cctctgcatgaggaagagcctggaacagcacccttccctagcacctgcaccccaatggga
gatcccatccaaggtgccctggacgtgaccatcatgtataagggccgcacagtgctgcag
gcggtggtggggcaccccagctgcgtcttcctgtatggaccccctggcccagccatcagg
gcctcagagccccagcaggtggtcttccccagccctgctgagctccctgatcagaagcag
ctgcactatacagagaagctgttgcagcacgtgacccctggcctacagctggagcttcgg
ggactggcactgtgggctcggcgcatgggcaagtgcaaagtgtactgggaggtgggcagt
cccctgggctcggccaacccctccagcccagcccagctgctggaacgcaactgcaatacc
cccatcttcgacttcaacaccttcttccgagagctgggggagttccggacacgaaggcgc
caaggctccccacattacaccatctacctgggctttgggcaggacctgtcagcagggagg
cctaaggaaaagagcctggtcctggtgaagctggagccatggctgtgccgggtgtacctg
gagggtgtgcaacgtgagggtgtgtcctccctggacagcggcagtctcagcctgtccctg
tcgagcaccagcagcctctacgatgacattgaacacttcctcatggagcttcaacagcca
gcctag
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