Sciurus carolinensis (gray squirrel): 124958725
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Entry
124958725 CDS
T08117
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03420
Nucleotide excision repair
ncar04120
Ubiquitin mediated proteolysis
ncar05161
Hepatitis B
ncar05170
Human immunodeficiency virus 1 infection
ncar05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124958725
09124 Replication and repair
03420 Nucleotide excision repair
124958725
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
124958725
09172 Infectious disease: viral
05170 Human immunodeficiency virus 1 infection
124958725
05161 Hepatitis B
124958725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncar04121
]
124958725
03400 DNA repair and recombination proteins [BR:
ncar03400
]
124958725
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
124958725
DNA repair and recombination proteins [BR:
ncar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
124958725
TCR (transcription coupled repair) factors
Cul4-CSA complex
124958725
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
124958725
NCBI-ProteinID:
XP_047373050
LinkDB
All DBs
Position
11:13656908..13686375
Genome browser
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE
TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELRQVSHTEMEHEVAC
LDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaactacgtggtaacggcgcagaagcccaccgccgtgaacggctgcgtgacc
ggacattttacttcagctgaagacttgaacttgttgattgccaaaaacacgagattagag
atctatgtggtcactgcggaggggcttcggccagtcaaagaggtgggcatgtatgggaag
attgcagtcatggagcttttcaggcccaagggggagagcaaggacctgctgtttatcttg
acagctaaatacaatgcctgcatcctggagtataagcagagcggcgagagcattgatatc
attacacgagcacatggcaatgtccaggatcgtattggccgcccctcagaaactggcatt
attggtatcattgaccctgagtgtcgaatgattggcctgcgactctacgatggcctcttc
aaggttattccactagatcgggacaataaagagctcaaggcctttaacatccgtctggag
gaattgcatgtcatcgatgtcaagttcctatatggttgtcaagcacccaccatttgcttt
gtctaccaggaccctcaggggcggcacgtaaaaacctatgaggtatctctccgagagaag
gagttcaataagggcccgtggaagcaggaaaatgtagaggctgaagcctccatggtgatt
gcagtcccagagccctttggaggagccatcatcattggacaggagtccattacctatcac
aatggcgacaagtacctggcgattgcccctcctatcatcaagcaaagcacaattgtgtgc
cacaatcgggtagaccctaatggttctcgatacctgctgggagacatggaaggacgactc
ttcatgctgcttttggagaaggaggaacaaatggatggtactgtcaccctcaaagatctc
cgtgtggagctcctcggagagacctccattgctgagtgcctaacgtaccttgataatggt
gttgtgttcgtcgggtctcgcttaggtgactcccagcttgtgaagctcaacgttgacagc
aatgaacaaggctcctatgtagtggccatggaaaccttcaccaatttaggacccattgtg
gatatgtgcgtggtggacctggagaggcaggggcaggggcagctggtcacttgctctggg
gctttcaaagaaggttccttgcggatcatccggaatggaattggaatccacgaacacgct
agcattgacttaccaggcatcaaaggcttatggccactgcggtctgaccccaaccgagag
actgatgacactttggtgctttcttttgtgggccagacaagagttctcatgctaaatgga
gaagaggtggaagaaactgaactgatgggttttgtggatgatcagcagactttcttctgt
ggtaatgtggctcatcagcagcttatccagatcacttcagcatctgtgaggttggtctct
caagagcccaaagctctggtcagtgagtggaaggagcctcagggcaagaacatcagcgtc
gcctcgtgcaacagcagccaggtggttgttgccgtggggagggccctttactacctgcag
attcatccacaggagctccggcaggtcagccacacagagatggaacatgaggtggcttgc
ttggacatcaccccattaggggacagcaatggactgtccccactgtgtgccattggcctc
tggacagacatctctgcccgaatcttaaagctgccttcttttgaactactgcacaaggag
atgctgggtggagagatcattcctcgctccatcctgatgaccacttttgagagtagccac
tacctcctttgtgccttgggagatggagcccttttctactttgggctcaacattgagaca
ggcttgttgagcgaccgaaagaaggtgactttgggcacacagcccacagtattgaggact
ttccgttctctttctaccaccaacgtctttgcttgctctgaccggcccactgtcatctac
agcagcaaccacaagttggtcttctccaatgtcaacctcaaggaagtgaattacatgtgt
cccctcaactcagatggctatcctgacagcctggcactggccaacaacagcaccctcacc
atcggcaccatcgatgagatccagaagctgcacattcgcactgttcccctctatgagtct
cccaggaagatctgttatcaggaagtgtcccagtgctttggggtcctctccagccgcatc
gaagttcaagacaccagtggaggcacaactgccctgaggcccagtgccagcacccaggcc
ctgtccagcagtgtcagctccagcaagctgttctccagcagcactgcccctcacgagacc
tcgttcggagaagaggtggaggtgcacaacctccttatcatcgaccagcacacctttgaa
gtgctccatgcccaccagtttctacagaacgagtatgcactcagcctggtctcctgcaag
ctgggtaaagaccccaacacgtacttcattgtgggcacagcgatggtgtatcctgaagag
gcagaacccaagcagggccgaattgtcgtctttcagtattcggatggaaaactacagact
gttgctgaaaaggaagtaaaaggggctgtgtactctatggtggaatttaacgggaagctg
ctcgccagcatcaacagcacggtgcggctctacgagtggaccacagaaaaggagctgcgc
accgagtgtaaccactacaacaacatcatggccctctacctgaagaccaagggcgacttc
atcctggtgggcgacctcatgcgctcagtgctgctgcttgcctacaagcccatggaggga
aactttgaggagattgcccgagactttaatcccaactggatgagtgcagtggaaatcttg
gatgacgacaatttcctgggggccgaaaatgcctttaacttgttcgtgtgtcagaaggac
agtgctgccaccactgatgaggagcggcagcacctgcaggaggtcgggctcttccacctg
ggcgagttcgtcaacgtcttctgccacggctccctggtcatgcagaatctgggcgagact
tccacccccacacagggctcagtgctctttggcacggtcaacggcatgattgggctggtg
acctcactgtcagagagctggtacaacctcctgttggacatgcagaatcgactcaataaa
gtcattaaaagcgtgggcaagatcgagcactctttctggagatcctttcacactgagaga
aagacagaacccgccacaggcttcattgatggcgacctgattgagagtttcctggatatc
agccgccccaagatgcaggaggttgtggcaaacctacagtacgacgatggcagcggtatg
aagcgagaggccactgcagacgacctgatcaaggttgtggaggagctgacccggatccat
tag
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