Sciurus carolinensis (gray squirrel): 124959733
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Entry
124959733 CDS
T08117
Name
(RefSeq) autophagy-related protein 13 isoform X1
KO
K08331
autophagy-related protein 13
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04136
Autophagy - other
ncar04140
Autophagy - animal
ncar04211
Longevity regulating pathway
ncar05010
Alzheimer disease
ncar05014
Amyotrophic lateral sclerosis
ncar05016
Huntington disease
ncar05017
Spinocerebellar ataxia
ncar05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124959733
04136 Autophagy - other
124959733
09150 Organismal Systems
09149 Aging
04211 Longevity regulating pathway
124959733
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
124959733
05014 Amyotrophic lateral sclerosis
124959733
05016 Huntington disease
124959733
05017 Spinocerebellar ataxia
124959733
05022 Pathways of neurodegeneration - multiple diseases
124959733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124959733
03029 Mitochondrial biogenesis [BR:
ncar03029
]
124959733
Membrane trafficking [BR:
ncar04131
]
Autophagy
Autophagosome formation proteins
ULK complex
124959733
Atg1 complex
124959733
Mitochondrial biogenesis [BR:
ncar03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
124959733
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
124959733
NCBI-ProteinID:
XP_047374026
LinkDB
All DBs
Position
11:complement(32749988..32798135)
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AA seq
550 aa
AA seq
DB search
METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLNGLGEGFQTVRVGTVGTPV
GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYSSSSPMHPCNYRTAGEDAGV
TYPSVEDSQEVCTTSFSTSPPSQCVFTVTKAHFQTPTPVVTDTLRVPMAGLAFSHQLSSS
RLSYQPAVLGLGSADLAYPVVFAAGLNAPHPHQLMVPGKEGGVPLAPNQPAHGAQADQER
LATHTPADMAHCAATPSSSEDTETVSNSSEGRASPHDVLETIFVRKVGAFVNKPINQVTL
TSLDIPFAMFAPKNLELEDTDPMVNPPDSPEPASPLHGSLHSEGSSGGSSGNAHDDFVMI
DFKPAFSKDDILPMDLGTFYREFQNPPQLSSLSIDIGAQSMAEDLDSLPEKLAVHEKNVR
EFDAFVETLQ
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggaaactgacctcaattcccaggacagaaaggacctggacaagttcattaagtttttt
gccctcaagacggtccaagtgattgtccaggctcgacttggtgaaaagatttgcactcgt
tcatcttcttcccccacaggctcagattggttcaacttagcaatcaaagacatcccggag
gttacacatgaggccaagaaggcactggcagggcagctgcccgctgtgggacggtccatg
tgcgtggagatctcactcaagacttccgagggagattccatggagctggaaatttggtgt
cttgaaatgaatgaaaagtgcgataaagaaatcaaagtttcctacacagtgtacaacaga
ctgtcactgctgctgaagtcccttcttgctataactagggtgacaccagcctacagactc
tcccgaaaacaagggcatgaatatgtcatcttgtacaggatatattttggggaagttcag
ctgaatggcttaggagaaggcttccagactgttcgtgttgggacagtgggcacccctgtg
ggcaccatcactctttcttgtgcttacagaattaacttggcattcatgtccaccaggcaa
tttgagaggaccccacctatcatggggattatcattgatcactttgtggaccgtccctat
tccagctcctctcccatgcacccctgcaattacagaactgctggggaggatgctggagtg
acatacccatcagtggaagactctcaagaagtgtgtacgacctctttttccacctctcct
ccatcccagtgtgtgtttactgtcacaaaggcacattttcagacccctactcctgtggtg
acggatactctgagggtccccatggcaggactggccttttcccatcaactctcaagctct
cgcctttcctatcagcctgctgtcctgggccttggatcagctgacctggcttatccagta
gtgttcgctgctggcttaaatgctccgcaccctcaccagctgatggttcctgggaaggaa
ggtggggtgcctcttgctcccaaccagccagcccatggtgcccaggctgaccaggagaga
ctggcgacccacactcctgctgacatggcccactgtgctgccacaccttccagcagtgag
gatactgaaactgtgtccaacagcagtgagggacgggcctccccacatgatgtcctggag
accatctttgtccggaaagtgggggcttttgtcaacaaacccatcaaccaggtgactctg
acaagtttggacataccctttgccatgtttgctccgaagaatttggagctggaggatact
gatcctatggtgaatcctccagactccccagaacccgcgtctcctctccatggcagcctg
cactcagagggctccagcgggggcagcagtggcaatgcacacgatgacttcgttatgatt
gactttaaaccggctttttctaaagatgacattcttccgatggacttggggaccttctat
cgtgaatttcagaatccccctcagctgagcagcctctccatagatatcggggcgcagtcc
atggctgaagacttggactcgttaccagagaagctggctgtgcatgagaagaacgtccgg
gaatttgatgcctttgtagaaaccctgcagtaa
DBGET
integrated database retrieval system
