Sciurus carolinensis (gray squirrel): 124959734
Help
Entry
124959734 CDS
T08117
Name
(RefSeq) DNA-binding protein SMUBP-2-like isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ncar03009
]
124959734
03012 Translation factors [BR:
ncar03012
]
124959734
Enzymes [BR:
ncar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124959734
5.6.2.5 RNA 5'-3' helicase
124959734
Ribosome biogenesis [BR:
ncar03009
]
Eukaryotic type
Other ribosome biogenesis factors
124959734
Translation factors [BR:
ncar03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124959734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
R3H
AAA_19
Viral_helicase1
ResIII
DEAD
AAA_22
nSTAND3
UvrD-helicase
SLFN-g3_helicase
zf-AN1
AAA_16
Helicase_RecD
ABC_tran
AAA_25
IstB_IS21
Flavi_DEAD
T2SSE
PhoH
DnaB_C
DAP3
AAA
AAA_18
UvrD_C_2
NTPase_1
NPHP3_N
Zot
Motif
Other DBs
NCBI-GeneID:
124959734
NCBI-ProteinID:
XP_047374035
LinkDB
All DBs
Position
11:complement(7653504..7683624)
Genome browser
AA seq
1001 aa
AA seq
DB search
MASATVESFVTKQLDLLELERDAEVKERRSWQESVSLKELQSRGVCLLKLQVSSQRTGLY
GRLLVTLEPRRCGSAGALPSNSFTSGDIVGLYDAAHEGAQLASGILTRITQKSVTVAFDE
SQDLQLNLVRESCYRLLKLANDVTYKRLRAALVALKKYHSGPASPLVELLFHGSPPSPAG
DIHPLVFYNATLDPSQKEAVSFALSQKELAIIHGPPGTGKTTTLVEIILQAVKQGLKVLC
CAPSNIAVDNLVERLAHWKQRVVRLGHPARLLESIQQHSLDAVLARSDSTQIVADIRKDI
DQILVKTKKTQDKRERSDFRSEIKLLRKELRQREEAAMVESLRLASVVLATNTGASADGP
LRLLPENHFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTIVSHRAAQDGLSR
SLMERLAEDLGAAAVRMLTVQYRMHQAIMRWASEALYGGQLTAHPSVAGHLLRDLPGVAD
TEETGLPLLLVDTAGCGLLELEEDDQSRGNPGEVRLVTLHVQALVDAGVSAGDIAVITPY
NLQVELLRQSLAHRHPELEIRSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAV
TRARRHVAIVCDSRTVTSHAFLKTLVDHFTAHGEVRTAFEYLSDIVPENYSQSSQSHSHS
RAAKPRGPSSATLPGRGPQEGRPQAASRGRRRRGPKPGGPEDCPQPCLNGEGPGAAGGAG
GAEHFRAAIEEFLASEETQLTFPASLTSHDRLRIHQMAEELGLRHESAGEGRARCVTVRK
GRAPRPASPPAQPLGQQHSQAPPDPKALPLERPQREKGGQEQPASGGQPAVGTGLRKAPE
ERKKKGRAAPAPPPPAEDFDALVSAAVKADSTCAHAKCSASVVTLGQLCQLCGRRYCLSH
HLPEVWAYGGRAHSGQTRPRPNARSWQLLPAPAAPRVHGCGEKARAHARQRISREGVLYA
GSGAKDRSLDPARRAQLQRKLDKKLGELSSQRTSRRKERGT
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggccactgtggagagcttcgtgaccaagcagctggacctactggagctggag
agggacgcggaggtgaaagagcgcaggtcctggcaggagagcgtctccctgaaggagctc
cagagccggggcgtgtgtctgctgaagctgcaggtgtccagccagcgcactgggctgtat
ggacggctgctggtcaccctggagcccaggcgctgcggctctgccggagcgcttcccagc
aacagcttcacttccggtgacattgtgggtctgtatgatgctgcccacgaaggtgctcag
ctggcctccgggatcctgacccgcatcacccagaaatcggtcacggtggcctttgacgag
tcccaggatctccagctgaacctggtcagagagagctgctacaggctgttgaagctcgcc
aatgacgtcacgtacaagcggctgagagcggctctggtggcgctgaagaagtaccactcg
gggccggcgtccccgctcgtcgagctgctcttccacgggtccccccccagccctgccggc
gacatacacccactggtgttctacaatgccacactggacccctcccagaaggaagccgtc
tcatttgctctgtcccagaaagagctcgccatcatccacggacctcctggcaccgggaaa
accacaaccttggtcgaaataatccttcaggctgtgaagcaaggcttaaaggttctgtgc
tgtgccccatctaacatcgcggtggacaacctggtggagcgtctggcgcactggaagcag
cgggtcgtgcgcctggggcaccccgcgcgcctgctggaatccattcagcagcactctctg
gacgcggttctggcccggagcgacagcacccagatcgtggcggacatcaggaaggacatc
gaccagatcctggtgaaaaccaagaagacccaggataagagagagaggagtgacttccgg
agcgaaatcaagctgttgaggaaggagctgaggcagcgggaggaggctgccatggtggag
agcctccggctggccagcgtggtcctggccaccaacacaggagcttctgctgacggcccc
ctgaggctgctgcctgagaaccactttgacgtggtggtcattgatgagtgcgcccaggcc
ctcgaagccagctgctggatcccgctgctgaaggctagaaagtgcatcctggctggagac
cacaagcagctgccgcccaccatagtctctcaccgggcagcgcaggatgggctgtctcgc
agcctgatggagcgcctggccgaggacctcggggcggcagcagtgcggatgctgaccgtg
cagtaccgcatgcaccaggccatcatgcgctgggcctcggaggccttgtacggcgggcag
ctcacagcccacccctccgtggcggggcacctcctgagggacctcccgggcgtggccgac
acggaggagacgggcctccccctgctgcttgtggacaccgccggctgtgggctgctggag
ctggaggaggatgaccagtcgagggggaacccgggcgaagtccgcctggtcaccctgcac
gtgcaggctctggtggacgctggcgtgagtgcgggtgacatcgccgtcatcacgccctac
aacctccaggtggagctgctgaggcagagcctcgcgcacaggcaccccgagctggagatc
aggtctgtggacggcttccagggccgggagaaggaggctgtggtcctgtccttcgtcagg
tccaaccggaaaggtgaggtgggtttcttggccgaggaccggcggatcaacgtggccgtc
acccgtgcacgtcgccacgtggctatcgtctgcgattcccggaccgtcaccagccatgcc
tttctgaagacgctggtggaccatttcacggcgcacggggaggtgcgcaccgccttcgag
tacctcagtgacattgtccccgagaactactcccagagctcccagagccacagccacagc
cgggccgccaagccccgcggcccctcctcagccacgctgcctgggcgggggccccaggag
gggcgcccgcaggctgccagccgtggccgcaggagacggggcccgaagcccgggggccct
gaagactgcccccaaccctgcctcaacggcgagggcccgggggccgcaggtggcgcagga
ggcgcggaacacttccgggccgcgatcgaggagttcctggccagcgaggagacgcagctc
acgtttcctgcgtccctgacgtctcacgacaggctgcgcatccaccagatggccgaggag
ctggggctgaggcacgagagtgccggcgagggcagggcccggtgtgtgaccgtgcgcaag
ggcagagccccccgccccgcctccccacccgcgcagcccctggggcagcagcacagccag
gccccgccggatccgaaggcgctgcccctggagaggccgcagagggagaagggcggccag
gagcagccggccagcggcgggcagcctgccgtgggcacggggctgcggaaggctccggag
gagagaaagaagaagggacgcgcggccccagccccacccccaccggctgaggattttgac
gccctggtgtcggctgccgtgaaggccgacagcacctgcgcccatgccaagtgctccgcc
agcgtcgtgaccctgggccagctctgccagctctgcggccgccgctactgcctcagccac
cacctgcccgaggtctgggcctacggcgggagggcccactctgggcagacccggcccagg
cccaacgcccgctcctggcagctgctcccagcgccagcagccccgagggtccacggctgt
ggtgagaaggcccgagcccacgcccgacagagaatcagccgggaaggagtcctgtacgca
ggcagcggggccaaggacaggtccctggatccagccaggcgggctcagctccagaggaag
ctggataagaagctgggggagctcagcagccagaggacgagcaggaggaaggagaggggc
acgtga
DBGET
integrated database retrieval system
