Sciurus carolinensis (gray squirrel): 124959797
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Entry
124959797 CDS
T08117
Name
(RefSeq) nuclear factor related to kappa-B-binding protein isoform X1
KO
K11671
nuclear factor related to kappa-B-binding protein
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124959797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ncar03036
]
124959797
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
124959797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NFRKB_winged
Motif
Other DBs
NCBI-GeneID:
124959797
NCBI-ProteinID:
XP_047374155
EnsemblRapid:
ENSSCRG00010016424
LinkDB
All DBs
Position
11:complement(129444549..129480322)
Genome browser
AA seq
1333 aa
AA seq
DB search
MIPAISFVRCSENVLNTGGEETMDSLDHMLTDPLELGPCGDGHGTRIMEDCLLGGTRVSL
PEDLLEDPEIFFDVVSLSTWQEVLSDSQREHLQQFLPHFPADSVEQQNELILALFSGENF
RFGNPLHIAQKLFRDGHFNPEVVKYRQLCFKSQYKRYLSSQQQYFHRLLKQILASRSDLL
EMARRSGPTLPFRQKRPSPSRSPEEREWRTQQRYLKVLREVKEECGDTALSSDEEATLDL
QEKFSFEDLSSWLPSSPARSPSPAVPLRVVPTLSTTDMKTTDKIELGDSDLKIMLKKHHE
KRKHQPDHPDLLTGDLTLSDIMTRVNAGRKGSLAVLYDLAVLKKKVKEKEEKKKKKIKLI
KSEAEDLTETLSNTEGVPPLSQAPSPLAIPSIKEEPLEDLKPCLGINEISSSFFSLLLEI
LLLENQASLPMLEERVLDWQSSPASSLNSWFSAAPNWAELVLPALQYLAGESRAVPSSFS
PFVEFKEKTQQWKLLGQSQDNEKELTALFQLWLETKDQAFCKQENEDSSDATTPIPRVRT
DYVVRPSTGEEKRVFQEQERYRYSQPHKAFTFRMHGFESVVGPVKGVFDKETSLNKAREH
SLLRSDRPAYVTILSLVRDAAARLPNGEGTRAEICELLKDSQFLAPDVTSTQVNTVVSGA
LDRLHYEKDPCVKYDIGRKLWIYLHRDRSEEEFERIHQAQAAAAKARKALQQKPKPPSKV
KSNSKETSLKILSSGPSEQSQMSLSDSSMPPTPVTPVTPTTPALPTTPISPPPVSSVNKS
GPTSVSEPAKSSSGVLLVSSPTMPQLGTMLSPASSQTPPSSQAAGRVISHSSSAGLPQVR
VVAQPSLPAVPQQSTGPAQTLPQMPGGPQIRVPATATQTKVVPQAVMATVPIKAQTGAPT
VQRPGPMQTGLTVSSLPAAASPVSKPATSSPGSSAPSASTTAVIQNVTGQNIIKQVAITG
QLGVKPQTGNSIPLTATNFRIQGKDVLRLPPSSITTDAKGQTVLRITPDMMATLAKSQVT
TVKLTQDLFGTGGGTAGKGISATLHVTSNPVHATDSPAKASSANAPSSAPAGTTVVKVTP
DLKPAEPSSSAFRLMPALGVSVADQKGKNTVASSEAKPAATIRIVQGLGVMPPKAGQTIT
VAAHAKQGASVASGSGTVHSSAVSLPSMNAAVSKTVAVASGAANTPISIGTGAPTVRQVP
VSTTVVSTSQAGKLPTRITVPLSVISQPMKGKSVVTAPIIKGNLGANLSGLGRNIILTTM
PAGTKLIAGNKPVSFLTAQQLQQLQQQGQATQVRIQTVPASHLQQGTASGSSKAVSTVVV
TTAPSPKQAPEQQ
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgattccagccatcagctttgtgagatgctctgaaaatgttttgaatactggtggagaa
gaaacaatggattccttggaccatatgctgacagatcccctggaacttggtccatgtgga
gatggccatggaacacgaatcatggaggactgcctcctgggaggcaccagggttagtcta
cctgaggaccttctggaggatcctgagatattctttgatgtcgtcagcctctcaacatgg
caggaagtattaagcgactctcagcgggaacacctccagcagtttctgcctcattttcct
gcagacagtgtggagcagcagaatgaactcatcctagctctattcagtggggagaacttt
cgctttggaaaccctctgcacattgctcagaagcttttccgagatggacactttaaccct
gaggtggtcaagtatcgacagctatgcttcaagtcacagtacaagcgatacctcagctct
cagcagcagtatttccatcgactgttaaagcagattcttgcttcccggagtgacttactg
gagatggcccgaaggagtggcccaacccttcccttccgacagaagcgtccttcaccatcc
cgtagccctgaggagcgggagtggcggacccagcagcgctacttgaaagtcttgagggaa
gtgaaggaggagtgtggtgacacagccttgtcctctgatgaagaggccacgttggattta
caagaaaaattttcttttgaagatctcagctcatggcttccgagctctccagcgcgttct
cctagtcctgcggtgcccctgagggtggtgcccacgctttccaccacggatatgaaaacc
acagataaaatagaactgggggacagtgacctgaagataatgttaaagaagcaccatgag
aagcggaaacatcaaccagatcacccggaccttttgacaggggacctgaccctcagtgac
atcatgactcgagtaaatgctggcaggaagggctcactagcagtcttatatgacttggct
gtccttaaaaaaaaggtgaaggagaaagaggaaaagaagaagaagaaaataaaactgatc
aaatcagaggcagaggatctgactgaaaccctgagcaacactgaaggggtcccacctctc
tcacaggccccatctcctctggcaataccttctatcaaggaagagcccctggaagacctc
aagccttgccttggaatcaatgagatatcttccagctttttttctcttctattagagatc
ttgcttttggagaatcaggctagccttcctatgctagaagaacgagttttggactggcag
tcatctccagccagctccctcaacagctggttctctgcagcccccaactgggccgagttg
gtattgcctgccctccagtatcttgctggagaaagtcgagctgttccttccagtttctct
ccatttgttgaattcaaagagaaaacccagcagtggaaattgcttggccagtctcaagat
aatgaaaaggaattaactgcactcttccagctatggctagagactaaagaccaggccttt
tgtaagcaagaaaatgaagacagctcagatgccacaacacctatccctcgggtaagaact
gactatgtggtgcggcccagcacaggggaggagaaacgggttttccaggagcaggagcgt
tacagatacagccaaccccataaggcgttcacctttcgcatgcatggctttgagtctgtg
gtggggccagtgaagggtgtgtttgacaaggagacctccctcaacaaagctcgtgagcat
tccctactgcgctccgatcggcctgcctatgtcaccatcctgtctcttgttcgggatgct
gcagctcggctgcccaatggagaaggcacacgggcagagatctgtgaactgctcaaggac
tcccagtttcttgcaccagatgttaccagcactcaggtgaacacagtagtgagtggtgct
ctggatcgactacattatgaaaaagatccttgtgtgaaatatgacattggtcggaaactg
tggatctacctgcatcgtgatcggagcgaggaagagtttgagcggattcaccaagcacaa
gcagctgcagctaaagccagaaaagcccttcagcaaaaacccaagcccccatccaaggtg
aagtccaatagcaaggagacctcattaaaaatcctcagcagtggaccttctgaacagagc
cagatgagcctcagtgattcaagtatgccacccaccccagtcactcctgtaacccccacc
acaccagcattgcctactaccccaatttcccctccgcctgtgtcatcagtgaacaaaagt
ggccctacctctgtctcagaaccagctaagtctagttcaggggttcttctggtgtcctca
ccaacaatgccacagctaggaacaatgctatccccagcttccagccagactccacccagt
tcacaggctgctggccgggtcataagccactctagttcagctggactgcctcaggtgcgg
gtggtggcccagccaagccttcctgctgtcccccagcagtcaacagggccagcacagacg
ctgccacagatgccaggaggaccacagatccgggtgccagccactgccacacagaccaaa
gtagtaccccaggcagtcatggccactgttccaatcaaagcacaaactggggcacccact
gtgcagcggcctggacccatgcagacagggctcacggtgtcaagtctccctgctgcagcc
agccctgtgagcaagccagccacaagttcccctgggagctcagctccaagtgcctccaca
actgcagtcattcaaaatgttacaggacagaacatcatcaagcaggtggccatcactggg
cagcttggtgtgaagccccagacaggcaacagcattcctctcacagccacgaacttccgt
attcagggtaaggatgtactgagactgccgccctcttccatcaccacagatgccaagggc
cagacggttctgcgaatcacaccggacatgatggccacgttggccaagtcccaggttacc
acagtaaagttgacccaggacctcttcgggacaggaggcggtactgcaggcaaaggcatc
tctgccaccttacacgtcacttccaatccagtccatgcaactgatagccctgccaaggcc
agttcagccaatgccccttcatctgctccagcaggcaccactgtggtcaaagtgactcct
gacctcaagccagcagagccctctagttcagcttttcgcttgatgccagcccttggtgtg
agtgtggcagatcagaaggggaaaaacacagtggcctcttcagaagcgaaaccagctgcc
acaatccgcatcgtgcagggcctgggagtgatgcctcccaaagcaggccagaccatcact
gttgcagcccatgccaagcaaggggcctcagtggccagtgggtctggaactgtccattct
tcagcggtatccttgcccagtatgaatgctgccgtgtccaagactgtggctgtagcttct
ggggctgcaaacacacccatcagcatcggtacaggagcccccactgtgcggcaggttccc
gtcagcaccacggttgtgtccacgtcccaggctgggaagctgcctacgcggatcacagtt
ccactctctgtgattagccaaccaatgaagggcaaaagcgtggtcacagcccctatcatc
aaaggcaaccttggagccaacctgagtgggttgggccgcaatatcatcctcaccaccatg
ccagcaggtactaagctcattgctggcaataagcctgttagtttcctcactgcccagcag
ttgcagcaacttcagcaacaaggtcaggccacacaggtgcgcatccagactgtccccgca
tcccatctccagcaaggcacagcttctggttcctccaaagcagtctccactgttgttgtg
accacagctccatctcctaaacaggcacctgaacagcagtga
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