Sciurus carolinensis (gray squirrel): 124960084
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Entry
124960084 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein Nup98-Nup96-like
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03013
Nucleocytoplasmic transport
ncar05014
Amyotrophic lateral sclerosis
ncar05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124960084
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
124960084
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
124960084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ncar03019
]
124960084
03036 Chromosome and associated proteins [BR:
ncar03036
]
124960084
Messenger RNA biogenesis [BR:
ncar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
124960084
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
124960084
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
124960084
NCBI-ProteinID:
XP_047374578
LinkDB
All DBs
Position
11:74588715..74720262
Genome browser
AA seq
1870 aa
AA seq
DB search
MSPNPKMGESEDHRNLLHSVSAFCAEPDPGSLCPEPSSPRLSRHTAFPGSTRPHHKSWNT
LQCFLKQRLILEMFNKSFGTPFGGGTGGFGTTSTFGQNTGFGTTSGGAFGTSAFGSSNNT
GGLFGNSQTKPGGLFGTNSFSQPATSTSTGFGFGTSTGTSNSLFGTASTGTSLFSSQNNA
FAQNKPTGFGNFGTSTNSGGLFGTTNTTSNPFGSTSGSLFGPSSFTAAPTGTTIKFNPPT
GTDTMVKAGVSTNISTKHQCITAMKEYESKSLEELRLEDYQANRKGPQNQVGAGTTTGLF
GSSPATSSATGLFSSSTTNSGFAYGQNKTAFGTSTTGFGTNPGGLFGQQNQQTTSLFSKP
FGQATTTQNTGFSFGNTSTLGQPSTNTIGLFGVTQASQPGGLFGTATNTSTGTAFGTGTG
LFGQTNTGFGAVGSTLFGNNKLTTFGTSTTSASSFGTTSGGLFGFGTNTSGNSIFGSKPA
PGTLGTGLGAGFGTALGAGQASLFGNNQPKIGGPLGTGAFGAPGFNTTTATLGFGAPQAP
IALTDPNASAAQQAVLQQHLNSLTYSPFGDSPLFRNPMSDPKKKEERLKPTNPAAQKALT
TPTHYKLTPRPATRVRPKALQTTGTAKSHLFDGLDDDEPSLANGAFMPKKSIKKLVLKNL
NNSNLFSPVNRDSEDLGSPSDYPENGERFSFLSKPVDENHQQDGDDDSLVSRFYTNPIAK
PIPQTPENSGNKHNNSNSVDDTFVALNMRVALRNGLEGSSEETSFHDESLQDDREEIENN
AYHLHPAGIVLTKVGYYTIPSMDDLAKITNEKGECIVSDFTIGRKGYGSIYFEGDVNLTN
LNLDDIVHIRRKEVIVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLAD
INYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEEEEEHPSKTSTKKLK
TAPLPPAGQTTPFQMALNGKPAPPPQSQSPEVEQLGRVVXLDSDMVDITQEPVLDSVLEE
SVPEDQEPVSASTHIASSLGINPHVLQIMKASLLADEEDVDTMDQHFSHLSSKGDTSQEI
CSPRLPISASHSSKSRSLAGGLLQSKFTSGVFLSPSASVQECRTPRVSSLMNIPSTSPWS
XPPPLTTVFTVPSPAPEVQLKTVGTRRQPGLXPLEKSVTFGKGKLLMDMALFMGRSFRVG
WGPNXLSLIVENTEWLSXTGNHHIADSVEXGFLPNPVVVKSLTESPFKVHLEKLSLRQKK
LDEDLQLYQTPLELKLKHSTVHVDELCPLIVPNPGVAVIHDYADWVKEASRELLETQIVK
HWSLTWTLCEALWGHLKELDSQLDDPSEYIQILERRRAFSRWLSHTAAPQIEEEVSLTRK
DNPVEAVFSYLTGSRISEACSLAQQSGDHRLALLLSQLVGSQSVRELLTMQLVDWHQLQA
DCFIQDERLRIFALLAGKPVWQLSEQKQINVCSQLDWKRSLAVHLWYLLPPTASISRALS
MYEEAFQNTSEGDKYACSPLPSYLEESGFVVEEEQDSRRPLQDVCFHLLKLYSDRHYDLN
QLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSEQSKGVLQASYAGQLESEGLWEWAIF
ILLHIDNSSMREKAVRELLTRHCQLMETPESWAKETFLTQKLCVPAEWIHEAKAVRAHME
SDKHLEALYLFKAGHWNHCHKLVIRHLASDAIINENYDYLKGFLEDLAPPERSTLIQDWE
MSGLVYLDYIRVIEMLHHIQQVDCSGYELEQLHTKVTSLCSRIEQIQCYNAKDRLAQSDM
AKRVANLLRVVLSLQHAPDAASDSTPDPQQVPLRLLAPHIGRLPMPEDYALEELRSLTQS
YLRELTVGSQ
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atgtcacccaatccaaagatgggggaatctgaggatcacagaaaccttcttcactcagta
tcagccttctgtgccgagccagacccaggaagcctctgtccagagcccagttctccacgc
ctgtccaggcacacagccttcccaggatcaacaaggccacatcataaatcctggaacact
ctgcaatgctttctgaagcaaagactcattttggagatgtttaataagtcatttggaacc
ccctttgggggtggcacaggtggctttggcacaacttcaacatttgggcagaatactggg
tttggcactactagtggaggggcatttggaacatctgcatttggttctagcaacaatact
ggaggcctatttggaaattcacagaccaaaccaggaggattatttggtaccaattcattt
agtcagccagctacctccacaagcactggatttgggtttggtacatcaacaggaacgtca
aatagcttgtttggaactgcaagtacagggaccagtctcttctcatctcaaaacaatgcc
tttgcacaaaataaaccaactggctttgggaattttggaacaagtactaacagtggagga
ctcttcggaactacaaataccacctctaatccttttggtagtacatctggttcacttttt
gggccaagtagttttacagcagcacctactgggactactattaagtttaaccctccaact
ggaacggatactatggtcaaagctggagtgagcactaacatcagtaccaagcaccagtgt
attactgctatgaaagaatatgaaagcaagtcattagaggaacttcgtttagaggattat
caggctaaccggaaaggcccccagaaccaggtgggagcaggtaccacaactggcttgttt
gggtcttctccagccacctccagtgcaacaggactcttcagctcttctactactaattca
ggatttgcatatggtcagaacaaaactgcctttggaacgagtacaactggatttggaaca
aatccaggtggtctctttggccagcagaatcagcagactactagcctcttcagcaaacca
tttggccaggctacaaccacacagaacactggtttttcctttggtaataccagcaccctt
ggacaaccaagcaccaacaccataggtttatttggagtaacacaagcctcacaaccagga
ggtctttttgggacagccacaaacaccagtactgggacagcatttggaacaggaacaggt
ctctttgggcagaccaatactgggtttggtgcagttggttcgaccctgtttggcaataac
aagcttactacctttggaaccagcacaaccagtgcttcttcatttggtacaaccagtggc
gggctctttggttttggcacaaataccagtgggaatagtatttttggaagtaaaccagca
cctgggactctgggaactgggcttggtgcaggatttggaacagctcttggtgctggacag
gcatctttgtttgggaacaaccaacctaagatcggagggcctcttggtacaggagccttt
ggggcccctggatttaatactacgacagccactttgggctttggcgccccccaggcccca
atagctttgacagatccaaacgcttctgctgcccagcaggctgttctccaacagcatctc
aatagtttaacttactcaccttttggagactcccctctcttccggaatcctatgtcagac
cctaagaagaaagaagagagattgaaaccaacaaatccagcagcccagaaggctcttact
acacctactcattataaactgacaccccggcctgctactagagtccgtccaaaggcttta
caaacaacaggcacagccaaatcacatctctttgatgggctggatgatgatgaaccatcc
ctagccaatggagcattcatgcccaagaagagcatcaagaagttggttttgaagaatctt
aataatagcaatctcttttctcctgttaatcgtgattcagaagatctaggttcaccatct
gattatccagaaaatggagagagatttagttttctgagcaaacctgtagatgagaaccat
cagcaggacggagatgatgattctcttgtatcgcgcttttatactaaccctattgccaaa
cccattcctcaaaccccagagaattctggaaataaacacaacaatagcaacagcgtggat
gatacatttgttgcattaaacatgagggtcgctttgcgaaatggactggaaggtagcagt
gaagaaacctcattccatgatgagtcactgcaagatgacagagaagaaatagaaaataat
gcttatcatctgcatccagcaggcattgttctcactaaggttggttactacactattcca
tctatggatgatcttgccaaaattaccaatgaaaaaggagagtgcattgtctctgacttc
accattggtcgtaaaggttatggctctatctattttgaaggagatgtgaatttgaccaat
ctaaatttggatgatattgtgcatatccgaaggaaagaagttatcgtctacttagatgat
aaccagaaaccacctgtgggtgaaggactaaataggaaggccgaagttacgttggatggg
gtttggccaacagataaaacatcccgttgtttaataaagagcccagatcgacttgctgat
atcaactatgaggggagactggaagcagtttcaaggaagcagggagctcagttcaaagag
taccgacctgaaactggttcttgggtgtttaaggtttcccatttttctaaatatgggctt
caagattctgatgaagaggaggaggaacatccatccaaaactagtacaaagaagttgaag
actgcccctttgcctcctgcaggccaaactaccccttttcagatggctcttaatggcaaa
cctgcacctccacctcagagccagagcccagaggtggaacagttagggagggttgtanga
ctggacagtgacatggtagatatcacccaggagccagttttggattccgtgttagaagag
agcgtgcctgaggatcaggaacctgtgtctgcctcaacacacattgcatcttcactggga
attaatccacatgtcttacagatcatgaaagcatcactgcttgctgacgaagaagatgta
gatacaatggatcaacacttcagtcatctttcttccaaaggagatacttctcaagaaatc
tgttctcccagactccccatttcagcatcccattcatcgaaatcccgttcactagctggt
ggattactacagtcaaaatttacaagtggagtttttctttcaccaagtgcctctgtgcaa
gaatgtcgcactcccagagtatcatctttaatgaatatcccatccacatcgccttggtct
ngtcccccccccctgaccactgtgtttacagtgcccagcccagcccctgaggttcagttg
aaaacagtgggtacacgcaggcaaccaggcctangtcctcttgaaaagtctgttacattt
ggcaagggaaaactcttgatggacatggccctattcatgggacgatcatttcgagttggt
tggggccccaactgactctcgctaatagtggagaacactgaatggctgtcatgaactgga
aatcatcacattgctgattctgtggaantaggattcttgcccaatccagtagttgttaaa
tcacttactgagtccccattcaaagttcatttggaaaaactcagtttgagacaaaagaag
ctggatgaagacctgcaattataccagacacctctggagcttaaattaaaacatagcact
gttcatgtggatgaactgtgtcctctcattgtccccaatccaggcgttgctgtcattcat
gactatgcagattgggttaaggaagcatctagagaattattggaaacacaaattgtgaag
cactggagcctgacatggacactatgtgaagccctatggggccacctgaaggagcttgac
agccagttggatgatcccagtgaatacattcagattctggagcgaagaagagcattttct
cgctggctatcccatactgccgctcctcagattgaagaggaagtctccctgacccgaaaa
gacaacccagtagaggctgtcttcagctacctcacaggcagtaggattagtgaagcctgc
tctttggcacagcagtcaggtgatcatcgtcttgcccttcttttatcccagttggtgggt
agccagtcagttcgggagctgctcaccatgcagctggtggattggcatcagctccaggct
gactgcttcatccaggatgagagactgcgcatctttgccctgttggctggaaaaccggtg
tggcagctctcagagcagaagcagatcaatgtgtgctcccagctggactggaaacgctcc
cttgctgtccatctttggtatttgcttccaccaacagcctccatttccagagcactcagc
atgtatgaagaagcatttcagaatacctctgaaggtgacaaatatgcctgttccccactt
ccttcatacctggaggagtctggctttgtggtagaggaggaacaagactcacggagacca
cttcaagatgtctgctttcaccttctaaaactttacagtgacagacattatgatctaaat
cagctgttggagcctcgaagcataactgcagatcctttggactaccgcctaagctggcat
ctgtgggaggtgctgcgagctcttaactatactcatctctcagagcagtctaagggtgtg
ctgcaggccagttatgctggccaacttgaaagtgaggggctctgggagtgggccatcttc
atcctcctgcacattgacaactcgagcatgcgtgagaaggctgttcgagagctgcttacc
cggcactgccaactaatggagacccctgaatcttgggctaaggagactttcctgacacag
aagctttgcgtgcctgctgagtggattcatgaggccaaagcagtgcgagcacacatggaa
tctgataaacacttggaggccctgtacttgtttaaggctggtcactggaaccactgccac
aaacttgtcattcggcacttagcttctgatgccattattaatgaaaactatgattacctg
aagggtttcttggaagacctagcacctccagagcgcagcactctaattcaggactgggaa
atgtctgggcttgtttatctggactatattcgagtcattgaaatgctccaccatattcag
caggtggattgctcaggttatgaactagaacagttacacaccaaagtgacatcactgtgc
agtcggatagagcagatccaatgttataatgccaaggaccgcctggctcagtcagacatg
gccaaacgtgtagccaacttgctgcgggtggtactgagcctgcagcatgcccctgatgca
gcctctgactcaacaccagatcctcagcaagtccctttgcgcctgctggctccacacatt
ggtcggctccccatgcctgaggactatgccttggaggaactgcgcagcctcacacagtcc
tatctgcgagaactgactgttggaagtcagtga
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