Sciurus carolinensis (gray squirrel): 124960134
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Entry
124960134 CDS
T08117
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ncar03036
]
124960134
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
124960134
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
PHD-1st_NSD
HDA2-3
ResIII
PHDvar_NSD
HTH_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
124960134
NCBI-ProteinID:
XP_047374659
LinkDB
All DBs
Position
1:205183796..205244695
Genome browser
AA seq
1936 aa
AA seq
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MENEDEMSEEEDGGLEGFHGFFPAEPVSLPKKKKSKKLKESKSKGKRKKKEGSNDELSEN
EEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDEDEEDNDDGCLKEPKSSGQLM
AEWGLDDVDYLFSEEDYHTLTNYKAFSQFLRPLIAKRNPKIPMSKMMTVLGAKWREFSAN
NPFKGSSAAAAAAAVAAAVETVTIAPPLAISPQQVPQPVPIRKAKTKEGKGPGVRKKIKG
SKDGKKKGKGKKVAGLKFRFGGIGGKRKKGSSSEEDEREESDLDSASIHSSSVRSECSAA
LGKKSKRRRKKRRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAP
EGKWSCPHCEKEGIQWEPKDDDDEEEEGGCEEEEDDHMEFCRVCKDGGELLCCDACPSSY
HLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWTEPPAPFMVGLPGPDVEPGMP
PPKPLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRKNDMDEPPPFDYGS
GDEDGKSEKRKNKDPLYAKMEERFYRYGIKPEWMMIHRILNHSFDKKGDVHYLIKWKDLP
YDQCTWEIDDIDIPYYDNLKQAYWGHRELMLGEDARLPKRLIKKGKKLKDDKQEKPPDTP
IVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVF
LYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFE
DNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSK
FFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIK
KLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGN
QVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRD
EGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLL
STRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERI
TQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDDVEGMMSQGQRPVTP
IPDVQSSKGGALAASAKKKHGSTPPGDNKDVEDSSVIHYDDAAISKLLDRNQDATDDTEL
QNMNEYLSSFKVAQYVVREEDGVEEVEREVIKQEENVDPDYWEKLLRHHYEQQQEDLARN
LGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDEDFEERPEGQSGRRQSRR
QLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRG
KSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFE
HVNGKYSTPDLVPEGPEGKKPGEVVSSDPNTPVPASPAHLPPAPLGLPDKMETQLGYLDE
KEPVVQKPKKPLDVQALPTAMDRGEGEDKHESSDSKERAREERLEEVEKAQPSPEQLPKE
EVPPEKEQALDKLELSLSHSRGDGSDCRPDDPKAEEKEPAETQQNGDREEDDEGKKEEKN
GKFKFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTHGYARWQD
IQNDPRYMILNEPFKSEIHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDP
NHPAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRL
PSMLSRIPPVAARLQMSERSILSRLTNRAGDPTIQQGAFGSSQMYNSNFGPNFRGPGPGG
IVNYNQMPLGPYVTDI
NT seq
5811 nt
NT seq
+upstream
nt +downstream
nt
atggagaacgaggacgagatgtcagaagaagaagatggtggtcttgaaggtttccatggc
ttcttccctgcggagcccgtgagccttcctaagaagaagaaatccaagaagctcaaggag
agcaagtccaaagggaagcggaagaagaaagaggggagcaatgatgagctttcagaaaat
gaggaggatctggaagagaagtcggagagcgaaggtagcgactactcccctaacaaaaag
aagaagaagaaactcaaggacaagaaggagaaaaaggccaagcggaagaagaaggacgag
gacgaggaggacaacgatgatgggtgcttaaaggagcccaagtcctcagggcagctcatg
gccgagtggggcctggatgacgtggactacctgttctcggaggaggactaccacacgcta
accaactacaaggccttcagtcagttcctccggccgctcattgccaagaggaacccgaag
atccccatgtccaaaatgatgaccgtcctaggtgccaagtggcgggaattcagtgccaac
aaccccttcaagggcagctctgcagcagcagctgcagcggctgtggccgcagctgtagag
acagtcaccatcgccccaccactggccatcagcccccagcaggtgccccagccggtaccc
atccgcaaggccaagaccaaagagggcaaggggcctggagtgaggaagaagattaaaggc
tccaaagatgggaagaagaagggtaaggggaagaaagtggctgggctcaagttccgcttt
ggagggatcggtggcaagaggaagaagggctcttcgagtgaggaagatgagcgggaggag
tcggacttggacagtgccagcatccacagctcctccgtgcgctctgagtgctccgcagcc
ctgggcaagaagagcaagaggcggcgcaagaagaggaggattgatgatggtgatggctat
gagactgaccaccaggactactgcgaggtgtgccagcagggaggggagatcatcctgtgt
gacacctgcccgcgggcctaccacctcgtctgcctggacccggagctggagaaggctccc
gagggcaagtggagctgtccgcactgtgagaaggaggggatccagtgggagccgaaggat
gacgacgacgaagaggaggagggcggctgtgaggaggaggaggacgaccacatggagttc
tgccgagtgtgcaaggacggcggcgagctgctctgctgcgacgcctgcccctcctcctac
cacctgcactgcctcaacccgccgctgcccgagatcccaaacggtgaatggctctgcccg
cgctgtacttgtcccccgctgaagggcaaagtccaacggatcctacactggaggtggaca
gagcccccagctcccttcatggtggggctgccaggaccggatgtggaaccaggaatgccc
ccacccaagcccctggagggtatcccagagagagagttctttgtcaagtgggccgggctc
tcctactggcactgctcatgggtgaaggagctacagctggagctgtaccacacagtgatg
tatcgcaactaccaaagaaagaacgacatggacgagccgccaccctttgactatggctcc
ggtgacgaggacggcaagagcgagaagaggaagaacaaggaccctttgtacgccaagatg
gaggagcgcttttaccgctatggcatcaagcccgaatggatgatgatccatcgcatcctg
aaccacagctttgacaaaaagggggacgtccactacctgatcaagtggaaagatctgccc
tatgaccagtgcacctgggagattgacgacattgacatcccctattatgacaacctgaag
caggcctactggggccacagggagctgatgctgggggaggacgccagactgcccaagcgg
ctgatcaagaagggcaagaagctgaaggacgataagcaggagaagcccccagacacaccc
attgtggaccccacggtcaagttcgacaagcagccatggtacatcgactccacaggtggt
acgctgcacccctaccagctggagggcctcaactggctgcgcttctcctgggcacagggc
acggacaccatcctggctgatgagatgggtctgggcaagaccgtgcagaccatcgtgttc
ctctactccctgtacaaagagggccactccaaggggccctacctggtcagcgcgcccctg
tctaccatcatcaactgggaacgcgagttcgagatgtgggcacccgacttctacgtggtc
acctacacaggggacaaggagagccgctcggtgatccgcgagaacgagttttccttcgag
gataatgccattcggagtgggaagaaagtgttccgcatgaagaaagaggtgcagatcaag
ttccacgtgctgctcacctcctacgagctcatcaccatcgaccaggccatcctgggctcc
atcgagtgggcttgcctcgtggtggacgaggcccaccggctcaagaacaaccagtccaag
ttctttagggtcctgaacagctacaagatcgattacaagctgctgctgacggggacgccc
cttcagaacaacctggaggaactcttccatctcctcaacttcctgactccagagaggttc
aacaacctggagggtttcctggaggagtttgctgacatctccaaggaggaccagatcaag
aagctgcatgacctgctgggaccccacatgctccggcggctcaaggctgatgttttcaag
aacatgccggccaagacggagctgatcgtccgtgtggagctgagtcagatgcagaagaag
tactacaagttcatcctcacacggaacttcgaggcgctgaactccaaggggggcgggaac
caggtgtccctgctcaacatcatgatggacctgaagaagtgctgcaaccacccctacctc
ttccctgtggccgctgtggaggcccctgtcttgcccaacggctcctatgatggcagctcc
ctggtgaagtcttcagggaagctcatgctgctgcagaagatgctcaagaagttgcgggat
gaggggcaccgcgtgctgatcttttctcagatgaccaagatgctggaccttctggaggat
ttcctggaatatgagggctacaagtacgagcggattgatggtggcatcaccgggggcctc
cggcaagaggcgattgacagattcaatgcccctggggcccagcagttctgcttcctcctc
tcaacccgggccggtggcctgggcatcaacctggccacggcagacacggtcatcatctac
gactcggattggaacccgcataacgacatccaggccttcagccgtgcccaccgcattggg
cagaacaagaaggtgatgatctaccgcttcgtgacccgggcctctgtggaggagcgcatc
acacaggtggccaagcgcaagatgatgctcacccacctggtggtgcgcccgggcctgggc
tccaagtcgggttccatgaccaagcaggagttggacgacatcctcaagttcggcactgag
gaactcttcaaggacgacgtggagggcatgatgtcccagggccagaggcctgtaacgccc
atccctgatgtgcagtcctccaaggggggagccctggctgccagcgcaaagaaaaaacat
ggcagcaccccaccaggtgacaacaaggacgtggaggacagcagtgtgatccactatgat
gatgcggccatctccaagctgctggaccggaaccaggatgccacagatgacacggagcta
cagaacatgaatgagtacctgagctccttcaaggtggcgcagtacgtggtgcgcgaagag
gatggcgtggaggaggtggagcgggaggtgatcaagcaggaggagaacgtggaccctgac
tactgggagaagctgctgcggcaccactacgagcagcagcaggaggacctggcccgcaac
ctgggcaagggcaagcgcatccgcaagcaggtcaactacaacgacgcctcccaagaggac
caggagtggcaggatgaactctcggataaccagtccgagtattccatcggctccgaggac
gaggacgaggactttgaggaaaggccggaggggcagagtggacggcggcagtccaggagg
cagctgaagagtgacagggacaagcccctgccccctctgcttgctcgagtcggtggcaac
attgaggtcctgggcttcaacgcccgacagcggaaagcctttctgaacgccatcatgcgc
tggggcatgccgccccaggacgccttcaactcccactggctggtgcgagacctccgcgga
aagagtgagaaggaatttagagcctatgtgtccctcttcatgcggcacctgtgtgagccg
ggggcagacggcgcggagacctttgcggacggcgtgccccgggagggcctctccaggcag
catgtgctcacgcgcatcggggtcatgtcactggttaggaagaaggttcaggagtttgag
catgtcaatgggaagtacagcaccccggacttggttcctgagggacctgagggcaagaag
ccaggcgaggtcgtctcctcagaccccaacacgccagtgcctgccagccctgcccatctc
ccgcctgccccactgggcctgccagacaaaatggaaacacagctgggctacttggatgag
aaggaaccagtggtgcagaagccaaagaagcccctggatgtccaggccctgccaactgcc
atggacagaggggagggtgaggacaagcacgagagctcagacagcaaggagcgagcccga
gaggagcggctggaggaggtggagaaggcccagccctccccagagcagctgcccaaagag
gaagtgcctcctgagaaggagcaagctcttgacaagctggagctaagcttgagtcacagc
agaggggacggcagtgactgcaggccagatgaccccaaagccgaggagaaggagcctgct
gagacacagcaaaatggtgacagagaggaggacgatgaggggaagaaggaggagaagaat
gggaagttcaaattcatgttcaacattgctgacgggggcttcacagagctgcacactctg
tggcagaatgaggaacgtgccgccgtgtcctcgggaaagatctatgacatctggcaccgg
cgccacgactactggctgctggcgggcattgtgacgcatggctatgcccgctggcaggac
atccagaatgacccgaggtacatgatcctcaacgagcccttcaagtctgagatccacaag
ggcaactacctggagatgaagaacaagttcctggcccgcaggttcaagctgctggagcag
gcgctggtcattgaggagcagctccgcagggccgcgtacctcaacatgacccaggacccc
aaccacccagccatggccctcaacgcccgtctggccgaggtggagtgccttgctgagagc
catcagcacctgtccaaggagtcccttgccgggaacaagcctgccaatgccgttctgcac
aaggtcttgaaccagctggaggagctgctgagcgacatgaaggcggatgtgacacgcctg
ccctccatgttgtcgcgcatcccccccgtggccgcccgcttgcagatgtcggagcgcagc
atcttgagccgcctgaccaaccgtgctggggaccccaccatccagcagggcgctttcggc
tcttctcagatgtacaacagcaactttgggcccaacttccggggccctggaccgggaggg
atcgtcaactacaaccagatgcccctggggccctatgtgaccgatatctag
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integrated database retrieval system
