KEGG   Sciurus carolinensis (gray squirrel): 124960326
Entry
124960326         CDS       T08117                                 
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 1 isoform X1
  KO
K11984  U4/U6.U5 tri-snRNP-associated protein 1
Organism
ncar  Sciurus carolinensis (gray squirrel)
Pathway
ncar03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ncar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124960326
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ncar03041]
    124960326
   04121 Ubiquitin system [BR:ncar04121]
    124960326
Spliceosome [BR:ncar03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP specific factors
    124960326
 Complex C
   U4/U6.U5 tri-SnRNP specific factors
    124960326
Ubiquitin system [BR:ncar04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    124960326
SSDB
Motif
Pfam: SART-1 HIND
Other DBs
NCBI-GeneID: 124960326
NCBI-ProteinID: XP_047375004
LinkDB
Position
11:complement(9800898..9810288)
AA seq 808 aa
MGSSKKHRGEKEAAGTTAAAGTGGSTEQPPRHREHKKHKHRSGGGGSSGGERRKRSRERG
GERGSGRRGAEAEARSSAHGRERSQAEPSERRVKREKRDDGYEAAASSKTSSGDASSLSI
EETNKLRAKLGLKPLEVNAVKKEAGTKEEPVAADVINPMALRQREELREKLAAAKEKRLL
NQKLGKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAEKRAKLLEEMDQEFGVSTLVEEE
FGQRRQDLYSARDLQGLTVEHAIDSFREGETVILTLKDKGVLQEEEDVLVNVNLVDKERA
EKNVELRKKKPDYLPYAEDESIDDLAQQKPRSILAKYDEELEGERPHSFRLEQGGTADGL
RERELEEIRAKLRLQAQSLSSAGPRLASEYLTPEEMVTFKKTKRRVKKIRKKEKEVMVRA
DDLLPLGDQTQDGDFGSRLRGRGRRRVPEVEEVAPEDEEKEPVPQLPQSDDTRVENMDIS
DEEDSGALPSGSPEVLEEDEAELELQKQLEKGRRLRQLQQLRDSGEKLLPPQVVEIVKKL
ESRQRGWEEEEDPERKGAIVFNATSEFCRTLGEIPTYGLAGNREEQEELMDFERDEERSA
NGGSESDGEENIGWSTVNLDEEKQQQDFSASSTTILDEEPIVNRGLAAALLLCQNKGLLE
TTVQKVARVKAPNKSLPSAVYCIEDKMAIDDKYSRREEYRGFTQDFKEKDGYKPDVKIEY
VDETGRKLTPKEAFRQLSHRFHGKGSGKMKTERRMKKLDEEALLKKMSSSDTPLGTVALL
QEKQKAQKTPYIVLSGSGKSMNANTITK
NT seq 2427 nt   +upstreamnt  +downstreamnt
atggggtcgtcaaagaagcaccgcggagagaaagaggcggccgggactacggcggcggcc
ggcaccgggggctccaccgagcagccgccgcggcatagggagcacaaaaaacacaagcac
cggagtggcggcggcggcagcagcggcggtgaacgacggaagcggagccgggagcgtggg
ggcgagcgcgggagcgggcggcgtggggccgaagccgaggcccgcagcagtgcgcacggg
cgggagcgcagccaggccgagccctcggagcggcgcgtgaagcgggagaagcgcgatgac
ggctacgaggccgctgccagctccaaaactagctcaggagatgcctcatcacttagcatc
gaggagaccaataaactccgggcgaagttggggctgaaacccttggaggtcaatgctgtc
aagaaagaggcgggcaccaaggaggagcccgtggcagccgatgtcatcaaccccatggcc
ttgcgacagcgagaagagctccgggagaagctagcagctgccaaggagaagcgcctactg
aatcagaagttggggaagataaagacactgggggaggatgacccctggctggacgatact
gcagcctggatcgagaggagcagacagctgcagaaagagaaggatttggcagagaagagg
gcaaaactgctggaggagatggaccaagagtttggtgtcagcactctggtagaagaggag
tttgggcagaggcggcaggatctgtacagtgcccgggacctgcagggccttactgtggaa
catgccattgattcctttcgagaaggggagactgtgatcctcaccctcaaggacaaaggt
gtgctacaggaagaggaggatgtgctggtgaacgtgaacctggtagacaaggagcgggca
gagaagaacgtggagctgcggaagaagaagcccgactacctgccctacgcagaggacgag
agcattgacgacctggcccagcaaaaacctcgctccatcctggccaagtacgatgaggag
ctggaaggcgagcggccgcactccttccgtctggagcagggcggcactgctgatggtctg
cgggagcgggagctggaagagatcagggccaagctgcgactgcaggctcagtccctgagc
tcggcagggccccggctggcctcggagtacctcacacccgaggagatggtgacctttaaa
aagactaagcggagggtgaagaaaatccgcaagaaggagaaggaggtgatggtacgggca
gatgacctgctgcctctgggagaccagactcaagatggggactttggttccagactgagg
ggccggggtcggcgccgagtgcccgaagtggaggaggtagccccagaggacgaggagaag
gagcctgtgccccagctcccgcagtcagatgacacccgtgtggagaacatggacatcagt
gacgaggaggacagtggagcgctgccatcagggtcgccagaggtgctggaggaggacgaa
gcggagctggagctgcagaagcagctggagaaggggcgccggctgcggcagctgcagcag
ctgcgggacagtggggagaagctgctccctccccaggtggtggagattgtgaagaagctg
gagtctcgccagcggggctgggaggaggaggaggatcctgagcggaagggggccatcgtg
ttcaacgccacctcggagttctgccgcaccctgggggagatccccacctatggtctagct
ggcaaccgggaggagcaggaggaactcatggactttgaacgggatgaggagcgctccgcc
aatggcggctcagaatcagatggagaggagaacattggctggagcactgtcaacctggac
gaggagaagcagcagcaggatttctccgcctcctctaccaccattctggacgaggagccc
atcgtgaacagaggacttgctgccgccctgctgctctgccagaacaaagggctgctggag
accacagtgcagaaggtggcccgggtgaaggcccccaacaagtccctgccctcagccgtg
tattgcattgaggacaagatggccatcgatgacaagtacagccggcgggaggagtaccga
ggcttcacccaggacttcaaggagaaggacggctacaagcctgatgtaaagatcgagtat
gtggatgagacaggccgaaaactcacacctaaggaggctttccgccagctatcccaccgc
ttccatgggaagggctcgggcaagatgaagacagagcgccggatgaagaagctggatgag
gaggcgctcctgaagaagatgagctccagtgacacgcccctgggcaccgtggctttgctg
caggagaagcagaaggcccagaagactccatacattgtgctcagcggcagcggcaaaagc
atgaacgcgaacaccatcaccaagtga

DBGET integrated database retrieval system