Sciurus carolinensis (gray squirrel): 124960328
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Entry
124960328 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: remodeling and spacing factor 1-like
KO
K11657
remodeling and spacing factor 1
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124960328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ncar03036
]
124960328
Chromosome and associated proteins [BR:
ncar03036
]
Eukaryotic type
Chromatin remodeling factors
RSF complex
124960328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WHIM1
PHD
WSD
Motif
Other DBs
NCBI-GeneID:
124960328
NCBI-ProteinID:
XP_047375008
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Position
11:complement(79819420..79976926)
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AA seq
1439 aa
AA seq
DB search
MATAAAAAAAMAPPGCPGSCPNFAVVCSFLERYGPLLDLPELPFPELERVLQAPPADIGN
GEVPKELVELHLKLMRKIGKSVTADRWEKYLIKICQEFNSTWAWEMEKKGYLEMSVECKL
ALLKYLCECQFDDNLKFKNIINEEDADTMRLQPIGRDKDGLMYWYXLDQDHNVRMYIEEQ
DDQDGSSWKCIVRNRNELAETLALLKAQIDPVLLKNSSQQDNSSRESPTLEDEETKKEEE
TPKQEEQKENEKXKGEARLVDSVNCSTPSVLEETTMKIEKEDQKELVKLPVIVKLEKPLP
ESEEKKIIKEESDSFKENVKPIKVEVKESRGDPKDVKGSMEKLGVQEPERLEFSGNIRSS
QEITEKSTEETEKLKNDQQAKIPLKKREIKLSDDFDSPVKGPLCKSVTPTKEFLKDEVKQ
EEETCKRISTITTLSHEGKLMVNGEVGDEKVTPNLKTEQIXTKFYDTKEDVYNSPSKDRS
VIMEGNGAECLNSVITSLKINELEKEILLGKVADSSVSVLETHSQKGQLEEPGPPEMETS
LESSEIVKDFSLKTALSVTESCTMKVEEKPPKSKKDNSSPVLECLEKLEKSRKAFLDKDT
PRLSPIPEEVPKSTLESETPDPPEAAETFPPTKMTGHCEKLDLEKEGVECQSTSSFEGQF
LEKADPEILKRDSESTKIEMDNVDNVQTSGIEDPSETKGSVQKSKFKYKLVPEEETTASE
NTEITSERQKEGIKLTIRISSRKKKPDCPAQTPEPESKQEKTEKEEEKTNVGRTLRRSPR
ISRPTAKVAEIRDQKADKKRGEGEDEVEEESAALQKTDKKENSKKLEKDTNSKGSKVKPK
GKVRWTGSRTRGRWKYSSNDESDGSDSENSSAASEEEEXKESEEAIIADDDEPCKKCGLP
NHPELILLCDSCDSGYHTACLRPPLMIIPDGEWFCPPCQHKLLCEKLEERLQDLDVALKK
KERAERRKERLVYVGISIENIIPPQEPDFSEDQEEKKKDSKKSKANLLERRSTRTRKCIS
YRFDEFDEAIDEAIEDDIKEADGGGVGRGKDISTITGHRGKDISTILDEERKENKRPQRA
AAARRKKRRRLNDLDSDSNLDEEESEDEFKISDGSQDEFVVSDENPDESEEDPPSNDDSD
TDFCSRRLRRHPSRPMRQSRRLRRKTPKKKYSDDDEEEESEDNSRDSESDFSDDFSDDFV
ETRRRRSRRNQKRQINYKEDSESDGSQKSLRRGKEIRRVHKRRLSSSESEESYMSKNSED
DELAKESKRSVRKRGRSTDEYSEADEEEEEEGKPSRKRLHRIETDEESCDNTHGDADQRA
HDSQPRVLPSEQESTKKPYRIESDEEEDFENVGKVGSPLDYSLVDLPSTNGQSPGKAIEN
LIGKPAEKPQTPKDSSTASASLAPNGTSGGQEAGAPEEEEDELLRVTDLVDYVCNSEQL
NT seq
4320 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcggcagcggcggcggcgatggctcctccgggctgcccgggttcgtgc
cccaacttcgccgtagtctgctcctttttggagcgctatgggccgctgctagacctgcct
gagttgccgttccccgagctggagcgggtgttgcaggcgccgccggcggacatcggcaac
ggagaagttccaaaagaattggtggagctccatttgaagttgatgaggaaaattggaaaa
tctgttacagcagacagatgggaaaaatacttgatcaagatatgccaggagtttaacagc
acctgggcatgggagatggagaagaaggggtatcttgaaatgagtgttgaatgtaaacta
gcactcttaaagtatctttgcgagtgtcagtttgatgacaatcttaaattcaagaatatt
attaatgaggaggatgctgatactatgcgtctccagccaattgggcgagacaaagatggc
cttatgtactggtacncgttggatcaagatcataatgtcagaatgtacatagaagaacaa
gatgatcaagatggctcttcatggaaatgcattgtcagaaatcgaaacgagttggctgag
actcttgcactcctgaaagcacaaattgatcctgtactattgaaaaactctagccaacag
gacaattcttcccgggaaagtcctaccttagaggatgaggagactaaaaaagaggaagaa
acacctaaacaagaggaacagaaggaaaatgaaaagnaaaaaggtgaagcgcggctagta
gattcagtaaattgttctacacccagtgttctagaagagactactatgaaaattgaaaaa
gaagatcaaaaggaacttgtgaaactgccagtcatagtgaagctagaaaaaccattgcca
gaaagtgaggaaaaaaagattatcaaagaagaaagtgattctttcaaggaaaatgtcaaa
cccattaaagttgaagtgaaggaatccagaggagatcccaaagatgtcaaaggtagcatg
gagaaactgggagtacaggagcctgagaggctagaatttagtggcaatatcagatcttct
caagaaattactgagaaatctactgaagaaactgagaaacttaaaaatgaccaacaagcc
aagattccactaaaaaaacgagaaattaaactgagtgatgattttgacagtccagtcaaa
ggacctttatgtaaatcagttactccaacaaaagagtttttaaaagatgaagtaaaacaa
gaagaagagacttgtaaaaggatctctaccatcactaccttgagtcatgaagggaaacta
atggtaaatggagaagttggtgatgaaaaagtaactccaaatttgaagacagaacaaata
nngacaaagttttatgatacaaaggaagatgtctacaacagcccttctaaggacagaagt
gtcatcatggagggaaatggagcagagtgcttaaattctgtcataacaagtttgaaaata
aatgagcttgagaaagaaattcttctagggaaagttgcagatagttcagtctcagtctta
gagacccacagtcaaaaagggcagttagaggaacctggtcctccagaaatggaaacttct
cttgaatcttctgagatagtaaaggatttctctttaaaaactgctttatctgtcactgag
tcctgtaccatgaaagttgaagagaagccccccaaaagtaagaaggataacagttcacca
gtcctagaatgtcttgaaaagttagagaagtccagaaaggcttttcttgataaagacaca
ccaagattgagtccaatacctgaagaagttccaaagagtactctagaatcagaaacacca
gatcctcctgaagcagctgaaactttcccaccaactaaaatgactggccactgtgagaaa
ctagacttagaaaaagaaggggtagagtgtcagagtacaagttcttttgaaggtcagttc
ctagaaaaagcagacccagaaattctaaaaagggattctgagtccacgaagatagaaatg
gataatgtggacaatgtccagacctctggcatagaggacccttctgaaacaaagggttct
gtgcaaaaaagcaaatttaaatataagttggttcctgaagaagaaaccactgcctcagaa
aatacagaaataacttctgaaaggcagaaagaaggcatcaaattaacaattaggatatct
agtcggaagaagaagccagattgtcctgcccaaactccagaaccagaaagtaagcaagag
aagacagaaaaggaagaagagaaaacaaatgtgggccgtactttaaggaggtctccaaga
atatctagacctacagcaaaagtggctgaaatcagagatcagaaagctgataaaaaacga
ggggaaggagaagatgaagtggaagaagaatcagcagccttgcaaaaaacagacaaaaaa
gaaaattcaaaaaaactggagaaggatacaaattctaaaggaagcaaggtaaaacccaaa
ggcaaagttcggtggactggttctcgaacacgaggcaggtggaaatattccagcaatgat
gaaagtgatgggtctgacagtgaaaactcatctgcagcttcagaagaggaagaannaaaa
gaaagtgaagaagccatcatagcagacgatgatgaaccatgcaaaaaatgtggccttcca
aatcatcctgaactaattcttctgtgtgattcttgtgacagtggataccataccgcctgc
ctccgccctcctttgatgatcatccctgatggagaatggttctgccccccttgccaacat
aaactgctgtgtgaaaaattagaggaacgtttgcaagatttggatgttgccttaaagaaa
aaggagcgtgctgaaagaaggaaagaacgcttggtatatgtgggtatcagtattgaaaac
atcattcctccacaagagccagatttttctgaagatcaagaagaaaagaaaaaagattca
aaaaaatcaaaagcaaacttgcttgaaaggaggtcaacaagaacacggaaatgtataagt
tacagatttgatgaatttgatgaagcaattgatgaagctatagaagatgatatcaaagag
gctgatggaggaggagttggccggggaaaagatatctccaccatcacaggtcaccgtgga
aaagatatctctactattttagatgaagaaagaaaggaaaataaacgaccccaaagggca
gctgctgctcgacgaaagaaacgccggcgactaaatgatttggacagtgatagcaacctg
gatgaagaagagagtgaagatgaattcaagatcagtgatggatctcaagatgaatttgtt
gtatctgacgaaaacccagatgaaagtgaagaagatccaccatctaatgatgacagcgac
accgatttctgtagtcgtagattgaggcgacacccttcccggccaatgaggcaaagcagg
cgtttacgaagaaagaccccaaagaaaaagtactctgatgacgatgaagaggaggaatct
gaagataatagtagagactctgaaagtgactttagcgatgattttagtgatgattttgta
gaaactcggcgaaggcggtcaaggaggaaccaaaaaagacaaattaactataaagaagat
tcagaaagtgatggttcccaaaagagtttaagacggggcaaagaaataaggcgtgttcac
aagcgcagactttccagctcagagagtgaagagagctatatgtccaagaactctgaagat
gatgagctagctaaagaatcaaagcggtcagttcggaaacggggccgaagcacagatgag
tattcagaagcagatgaagaggaggaagaggaaggcaaaccatcccgcaaacgactacat
cgaattgagacagacgaggagagctgtgacaatactcatggagatgcagatcagcgtgcc
catgacagtcagcctagggtcctgccctcggaacaggagagcaccaagaagccctaccgg
atagaaagcgatgaggaagaggactttgaaaatgtaggcaaagtggggagcccattggac
tatagtttagtggacttaccttccaccaatggacagagtcctggcaaagccattgagaac
ttgattggcaagccagctgagaagcctcagacccccaaggacagcagcacagccagtgcg
agcctagcccccaatgggacgagtggtgggcaagaggcaggggcaccagaggaggaagaa
gatgagcttttgagagtgactgaccttgttgattatgtctgtaacagtgaacagttataa
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