Sciurus carolinensis (gray squirrel): 124961100
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Entry
124961100 CDS
T08117
Name
(RefSeq) F-box DNA helicase 1 isoform X1
KO
K10300
F-box DNA helicase 1 [EC:
5.6.2.4
]
Organism
ncar
Sciurus carolinensis (gray squirrel)
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncar04121
]
124961100
Enzymes [BR:
ncar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
124961100
Ubiquitin system [BR:
ncar04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
124961100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
F-box
F-box-like
UvrD_C_2
AAA_19
Viral_helicase1
AAA_30
zf_Tbcl_Rhp7
F-box_4
ResIII
AAA_12
Motif
Other DBs
NCBI-GeneID:
124961100
NCBI-ProteinID:
XP_047375811
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All DBs
Position
12:12837872..12907160
Genome browser
AA seq
1083 aa
AA seq
DB search
MCARGRPWRRVSSGQVPAPTLLPEALEGAARRFSGTGGEVRRFKRKHLTAIDCQHLARSH
LTVTQPFGQRWTNRDPNHGLYPRSRTKNGSRGQVCQKYSPEFFLADQQQCTNDMAKSSSV
GQDSCQDSEGDMIFAAESSCALPQEGDGEERLGSSESSLPPRKRSRSFKEESNNSTGISP
RDGVAKKTPRHLSPSCTRPREARQEAEDCLSWHFAESGETGQDIEDIGPDPIPDSYYGLL
GTLPCQEVPSHICSLPSEVLRHIFAFLPVEDLYCNLSLVCHLWKEIITDPLFIPWKKLYH
RYLMNEEQAVGKVDGILLSCGIEKESDLCVLNLIRYTATTKCSPSVDPERVLWSLRDHPL
LPEAEACVRQYLPDLYMAAGGVNVWALVAAMVLLSGSVNDIQQLLFCLRRPSSTVTMPDI
TETLYCIAVLLYAMREKGINISNRIHYNIFYCLYLQENSCTQTTKVKEEPSVWPGKKTIQ
LTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVKYAEKWSESRFLYVTFNKSIAKQAEL
VFPSNVICKTFHSMAYGHVGRKYQLKKKLNLFKLTPFMVNSVLAEGKGGFIRAKLVCKTL
ENFFASADEELTIDHVPIWCKNSQGQRVMVEQSEKLNGVLEASRLWDNMRKLGECKEEAY
QMTHDGYLKLWQLSKPLLASFDAIFVDEAQDCTPAIMNIVLSQPCGKIFVGDPHQQIYTF
RGAVNALFTVPHTHVFYLTQSFRFGVEIAYVGATILDVCKRVRKKTLVGGNHQSGIRGDA
KGQVALLSRTNANVFDEAVRVTEGEVPSRIHLIGGIKSFGLDRIIDIWILLQPEEERKKQ
NLIIKDRFIRRWVHKEGFSGFKRYVTAAEDKELEAKIAVVEKYNIRIPELVERIEKCHIE
DWDFAEYILGTVHKAKGLEFDTVHVLDDFVKVPCARHNLAQLPHFRVESFSEDEWNLLYV
AVTRAKKRLIMTKSLENILTLAGEYFLQAELTSNVLKTGVVRCCVGQCNNAIPVDTVLTM
KKLPITYSNRKENKGGYLCHSCAEQRIGPLAFLTASPEQVRSMERTVENIVLPRHEALLF
LVF
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgcacgggggaggccctggcgccgggtgagctcgggccaggtccccgcccccacg
ctgctccctgaggccctggaaggggcagctcgtcgtttctcggggactggtggagaagtg
agacggtttaagcggaagcatcttacagccatcgactgccaacatttggctcggagtcat
ttgactgtgacccagcccttcggtcagagatggacaaacagagatccgaatcatggtctc
tatcctagatccagaacaaaaaatgggagtaggggtcaagtatgtcaaaaatacagccct
gagttcttcctagctgatcaacagcagtgcaccaatgacatggccaaaagcagttctgtt
ggccaggacagctgtcaggactccgagggtgacatgatctttgctgcagagagcagttgt
gccctgcctcaggaaggtgatggagaagagagattgggctcctcagagtcttctttgccc
ccaaggaagcgctctcggtcctttaaggaagaaagtaataactctacagggatcagccca
agggatggagttgctaagaaaaccccaagacatttgtcgccatcatgcacaagacctagg
gaggccaggcaagaggcagaggactgtttgtcgtggcactttgcagaatctggagaaact
ggccaagacattgaggacattggtccggaccccattcctgactcatattatgggcttctt
gggactttgccctgccaagaagtgccaagccacatctgtagcctgcctagtgaagtcttg
aggcacatctttgccttcctccctgtggaagacctgtattgtaatctgagcttggtgtgc
cacctttggaaggaaataatcactgacccactgttcattccttggaagaagctgtatcat
cgatacctgatgaatgaagaacaagctgttggcaaggtggatggcatcctgctgagctgt
ggcatagagaaggaatcagacttgtgtgtactgaacctcatacgatacacagccaccact
aagtgctccccaagtgtagaccccgagagagtgctgtggagtctgagggaccatcccctc
cttcctgaggcggaggcgtgtgtgcgtcagtacctgcctgatctctacatggctgctggg
ggtgttaatgtctgggctctggtggcagccatggtgctcctctctggcagcgtgaatgac
atccagcagctactcttctgcctcaggagacccagttccacagtgaccatgccagatatc
accgagaccttatactgcatagctgtgctcctctacgccatgagggagaagggaattaac
atcagcaataggattcattacaacattttctattgcctgtatcttcaggagaattcctgt
actcagaccactaaagttaaagaggaaccatctgtgtggccaggaaagaagaccatccag
cttacacatgagcagcagctgattctgaaccataaaatggaacctctacaggtggtaaaa
attatggcatttgcaggcactgggaagacctctaccctggtcaagtatgctgagaagtgg
tctgagagcaggtttctgtatgtaacgttcaacaagagcattgcaaagcaggctgagctt
gttttccccagcaatgtcatctgcaaaacttttcattccatggcctatggacacgttggg
cggaagtaccagctgaagaagaagttgaatctctttaagttaacaccctttatggttaat
tccgtccttgctgaagggaaaggtggattcataagggccaagctagtgtgtaagacttta
gagaacttctttgcttcggctgatgaagaactgacgattgatcatgtgcctatttggtgt
aagaacagccaaggacagagagtcatggttgaacagagtgagaagctgaatggtgtcctt
gaagcaagccgactctgggacaacatgcggaagctaggggagtgcaaagaagaggcttac
caaatgactcatgatggctatttgaaactctggcagctgagcaagcctttgcttgcctct
tttgacgccatctttgtggatgaggcccaggactgtaccccagctatcatgaatatagtt
ctatctcaaccatgtgggaagatcttcgtaggggacccacaccaacagatctataccttc
cgtggcgcagtcaatgctctgttcacagtcccccacacgcacgtcttctatctcacacag
agttttagatttggtgtggaaatagcttatgtgggagctactatcttggatgtctgcaag
agggtgaggaagaagacactggttggaggaaaccatcagagtggcattagaggtgatgct
aagggacaagtggctctgttgtctcggaccaatgccaatgtgtttgatgaggctgtacgg
gtaactgaaggagaagtaccttcaaggatacatttgatcggggggattaaatcatttgga
ttggacagaatcattgatatttggatccttcttcagccagaggaagaacggaagaaacaa
aacctcatcattaaagacagattcatccgaagatgggtacacaaagaaggcttcagtggc
ttcaagaggtacgtgactgctgctgaggacaaggagcttgaagcaaagattgcagtagtt
gaaaagtataacatcaggatcccagaattggtggaaaggatagaaaaatgccatatagaa
gattgggactttgcagagtacattttgggcactgtgcacaaagccaaaggcttggagttc
gatactgtgcacgttttggatgattttgtgaaagtgccttgtgccaggcataatcttgcc
caacttcctcacttcagagttgagtcattttctgaggatgagtggaatttactgtatgtt
gcagtaactcgtgccaagaaacgtctcataatgaccaaatcactggaaaacattttgact
ttggctggggagtacttcttgcaagcagagctgacaagtaacgttttaaaaacaggagtg
gttcgctgctgtgtgggtcaatgcaacaatgccatccctgtggacactgtcctcaccatg
aagaagctgcccatcacttatagcaacaggaaggaaaacaagggtggctacctctgccac
tcctgtgcagagcagcggatcgggcctttggcattcttgactgcctcgcccgaacaggta
cgctccatggaacgcactgtggaaaacatagtgctgcccaggcacgaagccctgctcttc
ctcgtcttctga
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integrated database retrieval system
